Detail Information

Basic Information:


  VIRBase ID:  

HHID00061348

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-642a-5p:           ZNF579:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-642a-5p ZNF579
miRBase
Accession/Entrez ID		 MIMAT0003312 163033
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-642a-5p
rs1187651627 chr19:45674964    G/GATCCCCCACCCCAA
rs1441411829 chr19:45674963    TGGGGTGGGG/T
rs775648115 chr19:45674943    G/T
rs374751972 chr19:45674950    T/A
rs78902025 chr19:45674948    T/G

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF579
chr19:56088970-56088971(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56088978-56088979(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56088997-56088998(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56089044-56089045(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56089066-56089067(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56089122-56089123(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56089142-56089143(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56089176-56089177(-) m6A 3'UTR       24284625//24209618//25456834//24981863//28052920//27773535//27371828//22575960//22608085
chr19:56089359-56089360(-) m6A CDS       24284625//24981863//27773536
chr19:56089395-56089396(-) m6A CDS       24284625//27773536
chr19:56089459-56089460(-) m6A CDS       24284625//24981863//27773536
chr19:56089488-56089489(-) m6A CDS       24284625//24209618//24981863//27773536
chr19:56089512-56089513(-) m1A CDS       26863196//26863410
chr19:56089974-56089975(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:56090100-56090101(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//27371828//27773536//22575960//22608085
chr19:56090237-56090238(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22575960//22608085
chr19:56090325-56090326(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:56090345-56090346(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:56090582-56090583(-) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr19:56090672-56090673(-) m6A CDS       24284625//25456834//27371828//27773536//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-642a-5p
Exosome Primary ovarian tumor cells|Serum     18589210
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -
ZNF579
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-642a-5p
Interactor2: ZNF579

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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