Detail Information

Basic Information:


  VIRBase ID:  

HHID00061111

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-597-5p:           CERS2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-597-5p CERS2
miRBase
Accession/Entrez ID		 MIMAT0003265 29956
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - L3//LASS2//SP260//TMSG1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-597-5p
rs112056940 chr8:9741702    C/T
rs1283691183 chr8:9741699    TG/T
rs1313744079 chr8:9741704    A/G
rs1322031493 chr8:9741703    C/T
rs1435460970 chr8:9741705    C/T
rs769103445 chr8:9741706    T/A
rs769103445 chr8:9741706    T/C
rs878949867 chr8:9741683    CGTGT/C
rs908032273 chr8:9741707    G/A
rs908032273 chr8:9741707    G/C
rs908032273 chr8:9741707    G/T
rs960242475 chr8:9741696    C/T
rs780763708 chr8:9741690    G/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CERS2
chr1:150937513(-) A-I      intronic
chr1:150937454(-) A-I      intronic
chr1:150937540(-) A-I      intronic
chr1:150937463(-) A-I      intronic
chr1:150934823(-) A-I      intronic
chr1:150933926(-) A-I      intronic
chr1:150933917(-) A-I      intronic
chr1:150937531(-) A-I      intronic
chr1:150934838(-) A-I      intronic
chr1:150934813(-) A-I      intronic
chr1:150937444(-) A-I      intronic
chr1:150934805(-) A-I      intronic
chr1:150934850(-) A-I      intronic
chr1:150934791(-) A-I      intronic
chr1:150934814(-) A-I      intronic
chr1:150934003(-) A-I      intronic
chr1:150934827(-) A-I      intronic
chr1:150934824(-) A-I      intronic
chr1:150933974(-) A-I      intronic
chr1:150934822(-) A-I      intronic
chr1:150934821(-) A-I      intronic
chr1:150934820(-) A-I      intronic
chr1:150934818(-) A-I      intronic
chr1:150933982(-) A-I      intronic
chr1:150934815(-) A-I      intronic
chr1:150934809(-) A-I      intronic
chr1:150934789(-) A-I      intronic
chr1:150934750(-) A-I      intronic
chr1:150934783(-) A-I      intronic
chr1:150934734(-) A-I      intronic
chr1:150934773(-) A-I      intronic
chr1:150934777(-) A-I      intronic
chr1:150937570(-) A-I      intronic
chr1:150937530(-) A-I      intronic
chr1:150934720(-) A-I      intronic
chr1:150937529(-) A-I      intronic
chr1:150934712(-) A-I      intronic
chr1:150934707(-) A-I      intronic
chr1:150937512(-) A-I      intronic
chr1:150937503(-) A-I      intronic
chr1:150937476(-) A-I      intronic
chr1:150934770(-) A-I      intronic
chr1:150937471(-) A-I      intronic
chr1:150937587(-) A-I      intronic
chr1:150937467(-) A-I      intronic
chr1:150937450(-) A-I      intronic
chr1:150934939(-) A-I      intronic
chr1:150934934(-) A-I      intronic
chr1:150934926(-) A-I      intronic
chr1:150934925(-) A-I      intronic
chr1:150934678(-) A-I      intronic
chr1:150934872(-) A-I      intronic
chr1:150934049(-) A-I      intronic
chr1:150933863(-) A-I      intronic
chr1:150933872(-) A-I      intronic
chr1:150934864(-) A-I      intronic
chr1:150933938(-) A-I      intronic
chr1:150933947(-) A-I      intronic
chr1:150933950(-) A-I      intronic
chr1:150934863(-) A-I      intronic
chr1:150934861(-) A-I      intronic
chr1:150933960(-) A-I      intronic
chr1:150933964(-) A-I      intronic
chr1:150933967(-) A-I      intronic
chr1:150943190(-) A-I      intronic
chr1:150943164(-) A-I      intronic
chr1:150933983(-) A-I      intronic
chr1:150943000(-) A-I      intronic
chr1:150943267(-) A-I      intronic
chr1:150941807(-) A-I      intronic
chr1:150943149(-) A-I      intronic
chr1:150943064(-) A-I      intronic
chr1:150937435(-) A-I      intronic
chr1:150942012(-) A-I      intronic
chr1:150937477(-) A-I      intronic
chr1:150941867(-) A-I      intronic
chr1:150934679(-) A-I      intronic
chr1:150934048(-) A-I      intronic
chr1:150934007(-) A-I      intronic
chr1:150937515(-) A-I      intronic
chr1:150941939(-) A-I      intronic
chr1:150941858(-) A-I      intronic
chr1:150941887(-) A-I      intronic
chr1:150937436(-) A-I      intronic
chr1:150942997(-) A-I      intronic
chr1:150937539(-) A-I      intronic
chr1:150943213(-) A-I      intronic
chr1:150943266(-) A-I      intronic
chr1:150943172(-) A-I      intronic
chr1:150942641(-) A-I      intronic
chr1:150937524(-) A-I      intronic
chr1:150942538(-) A-I      intronic
chr1:150942501(-) A-I      intronic
chr1:150942996(-) A-I      intronic
chr1:150943110(-) A-I      intronic
chr1:150943063(-) A-I      intronic
chr1:150942020(-) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CERS2
chr1:150933075-150933076(-) m6A exon       24284625//24209618//24981863//22608085
chr1:150933165-150933166(-) m6A exon       24284625//24209618//24981863//22608085
chr1:150935453-150935454(-) m6A exon       24284625//24209618//24981863//22575960//22608085
chr1:150935464-150935465(-) m6A exon       24284625//24209618//24981863//22575960//22608085
chr1:150936893-150936894(-) m6A CDS//exon       24284625//24981863
chr1:150936923-150936924(-) m6A CDS//exon       24284625
chr1:150936971-150936972(-) m6A exon//intron       24284625
chr1:150938044-150938045(-) m6A 3'UTR//exon//intron       26404942
chr1:150938158-150938159(-) m6A 3'UTR//exon//intron       26404942
chr1:150938465-150938466(-) m6A 3'UTR//exon//intron       26404942//27773535
chr1:150938577-150938578(-) m6A 3'UTR//exon//intron       24284625//24981863//26404942//27773535//22608085
chr1:150938622-150938623(-) m6A 3'UTR//exon//intron       24284625//24981863//26404942//27773535//22608085
chr1:150938730-150938731(-) m6A CDS//exon//intron       24981863//26404942
chr1:150939303-150939304(-) m6A CDS//exon       27773535
chr1:150941486-150941487(-) m6A CDS//intron       22575960
chr1:150941510-150941511(-) m6A CDS//intron       22575960
chr1:150941552-150941553(-) Y CDS//intron       26075521
chr1:150941556-150941557(-) m6A CDS//intron       22575960
chr1:150941636-150941637(-) m6A 5'UTR//intron       24209618

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-597-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
CERS2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-597-5p
Interactor2: CERS2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...