Detail Information

Basic Information:


  VIRBase ID:  

HHID00061106

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-597-5p:           HEXIM1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-597-5p HEXIM1
miRBase
Accession/Entrez ID		 MIMAT0003265 10614
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CLP1//EDG1//HIS1//MAQ1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-597-5p
rs112056940 chr8:9741702    C/T
rs1283691183 chr8:9741699    TG/T
rs1313744079 chr8:9741704    A/G
rs1322031493 chr8:9741703    C/T
rs1435460970 chr8:9741705    C/T
rs769103445 chr8:9741706    T/A
rs769103445 chr8:9741706    T/C
rs878949867 chr8:9741683    CGTGT/C
rs908032273 chr8:9741707    G/A
rs908032273 chr8:9741707    G/C
rs908032273 chr8:9741707    G/T
rs960242475 chr8:9741696    C/T
rs780763708 chr8:9741690    G/T

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase HEXIM1
chr17:43225961-43225962(+) m6A 5'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr17:43226040-43226041(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226095-43226096(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226210-43226211(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226320-43226321(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226405-43226406(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226437-43226438(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43226447-43226448(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43226457-43226458(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43226493-43226494(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43226513-43226514(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43226536-43226537(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43226545-43226546(+) m6A 5'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43226599-43226600(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226642-43226643(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226687-43226688(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43226782-43226783(+) m6A CDS       24284625//24209618//25456834//24981863//27371828//27773536//22575960//22608085
chr17:43226886-43226887(+) m6A CDS       24284625//24209618//24981863//22575960//22608085
chr17:43226982-43226983(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr17:43226994-43226995(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr17:43227012-43227013(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr17:43227051-43227052(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr17:43227099-43227100(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr17:43227220-43227221(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43227287-43227288(+) m1A CDS       26863196
chr17:43227353-43227354(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43227398-43227399(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43227435-43227436(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43227470-43227471(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43227545-43227546(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr17:43227563-43227564(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227588-43227589(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227632-43227633(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227637-43227638(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227643-43227644(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227670-43227671(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227717-43227718(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227724-43227725(+) m6A 3'UTR       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr17:43227830-43227831(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-597-5p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
HEXIM1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-597-5p
Interactor2: HEXIM1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...