Detail Information

Basic Information:


  VIRBase ID:  

HHID00060996

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548a-3p:           SEC23A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548a-3p SEC23A
miRBase
Accession/Entrez ID		 MIMAT0003251 10484
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CLSD//hSec23A

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548a-3p
rs1164461265 chr6:18571854    A/G
rs1165672383 chr6:18571864    G/C
rs1367516995 chr6:18571852    G/A
rs1452081761 chr6:18571844    C/T
rs1456125774 chr6:18571853    C/A
rs371324260 chr6:18571856    T/TTAC
rs745784846 chr6:18571855    AT/A
rs753232100 chr6:18571865    C/T
rs765730274 chr6:18571860    T/G
rs1029034755 chr6:135239228    G/T
rs1178036684 chr6:135239234    A/T
rs1395774538 chr6:135239235    C/T
rs373439066 chr6:135239231    A/C
rs373439066 chr6:135239231    A/G
rs1181589874 chr8:104484390    G/T
rs1328816266 chr8:104484397    C/T
rs552025667 chr8:104484394    T/C
rs746672467 chr8:104484389    A/T
rs766393197 chr8:104484388    A/G
rs769687902 chr8:104484405    G/A
rs769687902 chr8:104484405    G/T
rs1177955102 chr6:18571847    A/G
rs1178800173 chr6:18571851    G/C
rs1236087532 chr6:18571849    C/A
rs1236087532 chr6:18571849    C/T
rs1441316829 chr6:18571850    T/C
rs1441316829 chr6:18571850    T/G
rs970024181 chr6:18571848    A/T
rs1252922886 chr6:135239223    A/T
rs1309130208 chr8:104484401    T/A
rs1375898875 chr8:104484398    C/G
rs745714043 chr8:104484402    T/A
rs776399840 chr8:104484399    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SEC23A
chr14:39538857(-) A-I      intronic
chr14:39538837(-) A-I      intronic
chr14:39538877(-) A-I      intronic
chr14:39538842(-) A-I      intronic
chr14:39538839(-) A-I      intronic
chr14:39538846(-) A-I      intronic
chr14:39543054(-) A-I      intronic
chr14:39546708(-) A-I      intronic
chr14:39546937(-) A-I      intronic
chr14:39525880(-) A-I      intronic
chr14:39549748(-) A-I      intronic
chr14:39549774(-) A-I      intronic
chr14:39526283(-) A-I      intronic
chr14:39549837(-) A-I      intronic
chr14:39549856(-) A-I      intronic
chr14:39553989(-) A-I      intronic
chr14:39526770(-) A-I      intronic
chr14:39562856(-) A-I      intronic
chr14:39567813(-) A-I      intronic
chr14:39567947(-) A-I      intronic
chr14:39567964(-) A-I      intronic
chr14:39568530(-) A-I      intronic
chr14:39541272(-) A-I      intronic
chr14:39526296(-) A-I      intronic
chr14:39568540(-) A-I      intronic
chr14:39570185(-) A-I      intronic
chr14:39570199(-) A-I      intronic
chr14:39570236(-) A-I      intronic
chr14:39570251(-) A-I      intronic
chr14:39570280(-) A-I      intronic
chr14:39570751(-) A-I      intronic
chr14:39523286(-) A-I      intronic
chr14:39535824(-) A-I      intronic
chr14:39526167(-) A-I      intronic
chr14:39518356(-) A-I      intronic
chr14:39515461(-) A-I      intronic
chr14:39542770(-) A-I      intronic
chr14:39568557(-) A-I      intronic
chr14:39526297(-) A-I      intronic
chr14:39571273(-) A-I      intronic
chr14:39526707(-) A-I      intronic
chr14:39542599(-) A-I      intronic
chr14:39542635(-) A-I      intronic
chr14:39523357(-) A-I      intronic
chr14:39568527(-) A-I      intronic
chr14:39568511(-) A-I      intronic
chr14:39568459(-) A-I      intronic
chr14:39568460(-) A-I      intronic
chr14:39505443(-) A-I      intronic
chr14:39568491(-) A-I      intronic
chr14:39568542(-) A-I      intronic
chr14:39568543(-) A-I      intronic
chr14:39568534(-) A-I      intronic
chr14:39568474(-) A-I      intronic
chr14:39568537(-) A-I      intronic
chr14:39568541(-) A-I      intronic
chr14:39568430(-) A-I      intronic
chr14:39526662(-) A-I      intronic
chr14:39568582(-) A-I      intronic
chr14:39568495(-) A-I      intronic
chr14:39546561(-) A-I      intronic
chr14:39568567(-) A-I      intronic
chr14:39568435(-) A-I      intronic
chr14:39568558(-) A-I      intronic
chr14:39568612(-) A-I      intronic
chr14:39568533(-) A-I      intronic
chr14:39568546(-) A-I      intronic
chr14:39568501(-) A-I      intronic
chr14:39526346(-) A-I      intronic
chr14:39526184(-) A-I      intronic
chr14:39541894(-) A-I      intronic
chr14:39526798(-) A-I      intronic
chr14:39567729(-) A-I      intronic
chr14:39570643(-) A-I      intronic
chr14:39533036(-) A-I      intronic
chr14:39540632(-) A-I      intronic
chr14:39526813(-) A-I      intronic
chr14:39519263(-) A-I      intronic
chr14:39523457(-) A-I      intronic
chr14:39546732(-) A-I      intronic
chr14:39523465(-) A-I      intronic
chr14:39523875(-) A-I      intronic
chr14:39525766(-) A-I      intronic
chr14:39546635(-) A-I      intronic
chr14:39518887(-) A-I      intronic
chr14:39518330(-) A-I      intronic
chr14:39518315(-) A-I      intronic
chr14:39571270(-) A-I      intronic
chr14:39518300(-) A-I      intronic
chr14:39549789(-) A-I      intronic
chr14:39515537(-) A-I      intronic
chr14:39533007(-) A-I      intronic
chr14:39538936(-) A-I      intronic
chr14:39533011(-) A-I      intronic
chr14:39533019(-) A-I      intronic
chr14:39533065(-) A-I      intronic
chr14:39534030(-) A-I      intronic
chr14:39534039(-) A-I      intronic
chr14:39534047(-) A-I      intronic
chr14:39536917(-) A-I      intronic
chr14:39540034(-) A-I      intronic
chr14:39540168(-) A-I      intronic
chr14:39540671(-) A-I      intronic
chr14:39540109(-) A-I      intronic
chr14:39540690(-) A-I      intronic
chr14:39538691(-) A-I      intronic
chr14:39540947(-) A-I      intronic
chr14:39540949(-) A-I      intronic
chr14:39541181(-) A-I      intronic
chr14:39541318(-) A-I      intronic
chr14:39541354(-) A-I      intronic
chr14:39541888(-) A-I      intronic
chr14:39541890(-) A-I      intronic
chr14:39541906(-) A-I      intronic
chr14:39541918(-) A-I      intronic
chr14:39533078(-) A-I      intronic
chr14:39541923(-) A-I      intronic
chr14:39541966(-) A-I      intronic
chr14:39523827(-) A-I      intronic
chr14:39541984(-) A-I      intronic
chr14:39542608(-) A-I      intronic
chr14:39542625(-) A-I      intronic
chr14:39542699(-) A-I      intronic
chr14:39542717(-) A-I      intronic
chr14:39542729(-) A-I      intronic
chr14:39542827(-) A-I      intronic
chr14:39542946(-) A-I      intronic
chr14:39544144(-) A-I      intronic
chr14:39544303(-) A-I      intronic
chr14:39546503(-) A-I      intronic
chr14:39546522(-) A-I      intronic
chr14:39546580(-) A-I      intronic
chr14:39546583(-) A-I      intronic
chr14:39546700(-) A-I      intronic
chr14:39542771(-) A-I      intronic
chr14:39541353(-) A-I      intronic
chr14:39540946(-) A-I      intronic
chr14:39522207(-) A-I      intronic
chr14:39541896(-) A-I      intronic
chr14:39542753(-) A-I      intronic
chr14:39526808(-) A-I      intronic
chr14:39518882(-) A-I      intronic
chr14:39541932(-) A-I      intronic
chr14:39567745(-) A-I      intronic
chr14:39520911(-) A-I      intronic
chr14:39526396(-) A-I      intronic
chr14:39511190(-) A-I      intronic
chr14:39534056(-) A-I      intronic
chr14:39549673(-) A-I      intronic
chr14:39526274(-) A-I      intronic
chr14:39543008(-) A-I      intronic
chr14:39532944(-) A-I      intronic
chr14:39550326(-) A-I      intronic
chr14:39526273(-) A-I      intronic
chr14:39542951(-) A-I      intronic
chr14:39543084(-) A-I      intronic
chr14:39526306(-) A-I      intronic
chr14:39523367(-) A-I      intronic
chr14:39526817(-) A-I      intronic
chr14:39540992(-) A-I      intronic
chr14:39518940(-) A-I      intronic
chr14:39569723(-) A-I      intronic
chr14:39526434(-) A-I      intronic
chr14:39568591(-) A-I      intronic
chr14:39543063(-) A-I      intronic
chr14:39544309(-) A-I      intronic
chr14:39541341(-) A-I      intronic
chr14:39538945(-) A-I      intronic
chr14:39526394(-) A-I      intronic
chr14:39537012(-) A-I      intronic
chr14:39553965(-) A-I      intronic
chr14:39533076(-) A-I      intronic
chr14:39549747(-) A-I      intronic
chr14:39540818(-) A-I      intronic
chr14:39570321(-) A-I      intronic
chr14:39541840(-) A-I      intronic
chr14:39534057(-) A-I      intronic
chr14:39523685(-) A-I      intronic
chr14:39546491(-) A-I      intronic
chr14:39540824(-) A-I      intronic
chr14:39543017(-) A-I      intronic
chr14:39514856(-) A-I      intronic
chr14:39540747(-) A-I      intronic
chr14:39545609(-) A-I      intronic
chr14:39541192(-) A-I      intronic
chr14:39533033(-) A-I      intronic
chr14:39565651(-) A-I      intronic
chr14:39540131(-) A-I      intronic
chr14:39518358(-) A-I      intronic
chr14:39570637(-) A-I      intronic
chr14:39518598(-) A-I      intronic
chr14:39540887(-) A-I      intronic
chr14:39519108(-) A-I      intronic
chr14:39526228(-) A-I      intronic
chr14:39542701(-) A-I      intronic
chr14:39523799(-) A-I      intronic
chr14:39545721(-) A-I      intronic
chr14:39523473(-) A-I      intronic
chr14:39549792(-) A-I      intronic
chr14:39533167(-) A-I      intronic
chr14:39525574(-) A-I      intronic
chr14:39541956(-) A-I      intronic
chr14:39523477(-) A-I      intronic
chr14:39537090(-) A-I      intronic
chr14:39523832(-) A-I      intronic
chr14:39518572(-) A-I      intronic
chr14:39550206(-) A-I      intronic
chr14:39523305(-) A-I      intronic
chr14:39540677(-) A-I      intronic
chr14:39534004(-) A-I      intronic
chr14:39534075(-) A-I      intronic
chr14:39525545(-) A-I      intronic
chr14:39542634(-) A-I      intronic
chr14:39541275(-) A-I      intronic
chr14:39525555(-) A-I      intronic
chr14:39562853(-) A-I      intronic
chr14:39518437(-) A-I      intronic
chr14:39526502(-) A-I      intronic
chr14:39541193(-) A-I      intronic
chr14:39523475(-) A-I      intronic
chr14:39541194(-) A-I      intronic
chr14:39541324(-) A-I      intronic
chr14:39523927(-) A-I      intronic
chr14:39525556(-) A-I      intronic
chr14:39540959(-) A-I      intronic
chr14:39535967(-) A-I      intronic
chr14:39552839(-) A-I      intronic
chr14:39533985(-) A-I      intronic
chr14:39525883(-) A-I      intronic
chr14:39533088(-) A-I      intronic
chr14:39536972(-) A-I      intronic
chr14:39541046(-) A-I      intronic
chr14:39540985(-) A-I      intronic
chr14:39523339(-) A-I      intronic
chr14:39538961(-) A-I      intronic
chr14:39511272(-) A-I      intronic
chr14:39526866(-) A-I      intronic
chr14:39542661(-) A-I      intronic
chr14:39523222(-) A-I      intronic
chr14:39569722(-) A-I      intronic
chr14:39544304(-) A-I      intronic
chr14:39523814(-) A-I      intronic
chr14:39510908(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED SEC23A
chr14:39568430(-) A-I intron -    22028664
chr14:39568435(-) A-I intron -    22028664
chr14:39568459(-) A-I intron -    22028664
chr14:39568460(-) A-I intron -    22028664
chr14:39568474(-) A-I intron -    22028664
chr14:39568491(-) A-I intron -    22028664
chr14:39568495(-) A-I intron -    22028664
chr14:39568501(-) A-I intron -    22028664
chr14:39568505(-) A-I intron -    22028664
chr14:39568511(-) A-I intron -    22028664
chr14:39568527(-) A-I intron -    22028664
chr14:39568533(-) A-I intron -    22028664
chr14:39568534(-) A-I intron -    22028664
chr14:39568537(-) A-I intron -    22028664
chr14:39568541(-) A-I intron -    22028664
chr14:39568542(-) A-I intron -    22028664
chr14:39568543(-) A-I intron -    22028664
chr14:39568546(-) A-I intron -    22028664
chr14:39568557(-) A-I intron -    22028664
chr14:39568558(-) A-I intron -    22028664
chr14:39568567(-) A-I intron -    22028664
chr14:39568582(-) A-I intron -    22028664
chr14:39568591(-) A-I intron -    22028664
chr14:39568612(-) A-I intron -    22028664
chr14:39550243(-) A-I intron -    21960545
chr14:39526273(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase SEC23A
chr14:39501361-39501362(-) Y 3'UTR//exon       25219674
chr14:39534115-39534116(-) Gm exon//intron       -
chr14:39536409-39536410(-) Y CDS//exon       25219674
chr14:39565178-39565179(-) m6A CDS       27773535
chr14:39565329-39565330(-) m6A 5'UTR       24981863//27371828
chr14:39572241-39572242(-) m6A 5'UTR//intron       24981863//27371828
chr14:39572280-39572281(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536
chr14:39572323-39572324(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536
chr14:39572346-39572347(-) m6A 5'UTR//intron       24284625//24981863//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548a-3p
Exosome Pooled sera     27278097
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Follicular fluid     23666971
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
SEC23A
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548a-3p
Interactor2: SEC23A

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...