Detail Information

Basic Information:


  VIRBase ID:  

HHID00060980

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-548a-3p:           LAMB1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-548a-3p LAMB1
miRBase
Accession/Entrez ID		 MIMAT0003251 3912
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CLM//LIS5

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-548a-3p
rs1164461265 chr6:18571854    A/G
rs1165672383 chr6:18571864    G/C
rs1367516995 chr6:18571852    G/A
rs1452081761 chr6:18571844    C/T
rs1456125774 chr6:18571853    C/A
rs371324260 chr6:18571856    T/TTAC
rs745784846 chr6:18571855    AT/A
rs753232100 chr6:18571865    C/T
rs765730274 chr6:18571860    T/G
rs1029034755 chr6:135239228    G/T
rs1178036684 chr6:135239234    A/T
rs1395774538 chr6:135239235    C/T
rs373439066 chr6:135239231    A/C
rs373439066 chr6:135239231    A/G
rs1181589874 chr8:104484390    G/T
rs1328816266 chr8:104484397    C/T
rs552025667 chr8:104484394    T/C
rs746672467 chr8:104484389    A/T
rs766393197 chr8:104484388    A/G
rs769687902 chr8:104484405    G/A
rs769687902 chr8:104484405    G/T
rs1177955102 chr6:18571847    A/G
rs1178800173 chr6:18571851    G/C
rs1236087532 chr6:18571849    C/A
rs1236087532 chr6:18571849    C/T
rs1441316829 chr6:18571850    T/C
rs1441316829 chr6:18571850    T/G
rs970024181 chr6:18571848    A/T
rs1252922886 chr6:135239223    A/T
rs1309130208 chr8:104484401    T/A
rs1375898875 chr8:104484398    C/G
rs745714043 chr8:104484402    T/A
rs776399840 chr8:104484399    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LAMB1
chr7:107611382(-) A-I      intronic
chr7:107588485(-) A-I      intronic
chr7:107588458(-) A-I      intronic
chr7:107588457(-) A-I      intronic
chr7:107582389(-) A-I      intronic
chr7:107582250(-) A-I      intronic
chr7:107606835(-) A-I      intronic
chr7:107606838(-) A-I      intronic
chr7:107611387(-) A-I      intronic
chr7:107606832(-) A-I      intronic
chr7:107606849(-) A-I      intronic
chr7:107606933(-) A-I      intronic
chr7:107611391(-) A-I      intronic
chr7:107611396(-) A-I      intronic
chr7:107611345(-) A-I      intronic
chr7:107611420(-) A-I      intronic
chr7:107588508(-) A-I      intronic
chr7:107588524(-) A-I      intronic
chr7:107588576(-) A-I      intronic
chr7:107588592(-) A-I      intronic
chr7:107606359(-) A-I      intronic
chr7:107611390(-) A-I      intronic
chr7:107611397(-) A-I      intronic
chr7:107594888(-) A-I      intronic
chr7:107595222(-) A-I      intronic
chr7:107596241(-) A-I      intronic
chr7:107597797(-) A-I      intronic
chr7:107594720(-) A-I      intronic
chr7:107611357(-) A-I      intronic
chr7:107590673(-) A-I      intronic
chr7:107590671(-) A-I      intronic
chr7:107590606(-) A-I      intronic
chr7:107590592(-) A-I      intronic
chr7:107590512(-) A-I      intronic
chr7:107588596(-) A-I      intronic
chr7:107588600(-) A-I      intronic
chr7:107606362(-) A-I      intronic
chr7:107588620(-) A-I      intronic
chr7:107588626(-) A-I      intronic
chr7:107588627(-) A-I      intronic
chr7:107590420(-) A-I      intronic
chr7:107590426(-) A-I      intronic
chr7:107611405(-) A-I      intronic
chr7:107590432(-) A-I      intronic
chr7:107590451(-) A-I      intronic
chr7:107590458(-) A-I      intronic
chr7:107611371(-) A-I      intronic
chr7:107606385(-) A-I      intronic
chr7:107611381(-) A-I      intronic
chr7:107611355(-) A-I      intronic
chr7:107590495(-) A-I      intronic
chr7:107588633(-) A-I      intronic
chr7:107588585(-) A-I      intronic
chr7:107606376(-) A-I      intronic
chr7:107594792(-) A-I      intronic
chr7:107582368(-) A-I      intronic
chr7:107590565(-) A-I      intronic
chr7:107594721(-) A-I      intronic
chr7:107594714(-) A-I      intronic
chr7:107606290(-) A-I      intronic
chr7:107611207(-) A-I      intronic
chr7:107588572(-) A-I      intronic
chr7:107633136(-) A-I      intronic
chr7:107611315(-) A-I      intronic
chr7:107617988(-) A-I      intronic
chr7:107588495(-) A-I      intronic
chr7:107588528(-) A-I      intronic
chr7:107611316(-) A-I      intronic
chr7:107588625(-) A-I      intronic
chr7:107582401(-) A-I      intronic
chr7:107606301(-) A-I      intronic
chr7:107588537(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LAMB1
chr7:107582323(-) A-I intron -    21960545
chr7:107590565(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LAMB1
chr7:107564312-107564313(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr7:107564338-107564339(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr7:107564355-107564356(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr7:107564365-107564366(-) m6A 3'UTR//exon       24981863//27773535//22608085
chr7:107564467-107564468(-) m6A CDS//exon       24981863//27773535//22608085
chr7:107564510-107564511(-) m6A CDS//exon       24981863//27773535//22608085
chr7:107564716-107564717(-) m6A CDS//exon       24981863//27773535//22575960//22608085
chr7:107564773-107564774(-) m6A CDS//exon       24981863//27773535
chr7:107564819-107564820(-) m6A CDS//exon       24981863//27773535
chr7:107566697-107566698(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107566720-107566721(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107566773-107566774(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107566791-107566792(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107569521-107569522(-) m6A CDS//exon       24981863//27773535
chr7:107569528-107569529(-) m6A CDS//exon       24981863//27773535
chr7:107569539-107569540(-) m6A CDS//exon       24981863//27773535
chr7:107569553-107569554(-) m6A CDS//exon       24981863//27773535
chr7:107569710-107569711(-) m6A exon//intron       24981863//27773535
chr7:107571811-107571812(-) m6A CDS//exon       24981863//27773535
chr7:107571856-107571857(-) m6A CDS//exon       24981863//27773535
chr7:107571881-107571882(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107571895-107571896(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107571909-107571910(-) m6A CDS//exon       26404942//27773535//22575960
chr7:107571930-107571931(-) m6A CDS//exon       26404942//27773535//22575960
chr7:107572633-107572634(-) m6A CDS//exon       27773535//22575960
chr7:107572667-107572668(-) m6A CDS//exon       27773535//22575960
chr7:107572673-107572674(-) m6A CDS//exon       26404942//27773535//22575960
chr7:107572748-107572749(-) Gm CDS//exon       -
chr7:107572758-107572759(-) m6A CDS//exon       27773535//22575960
chr7:107572766-107572767(-) m6A CDS//exon       27773535//22575960
chr7:107572785-107572786(-) m6A CDS//exon       27773535//22575960
chr7:107572812-107572813(-) m6A CDS//exon       27773535//22575960
chr7:107572821-107572822(-) m6A CDS//exon       27773535
chr7:107572923-107572924(-) m6A exon//intron       27773535
chr7:107575881-107575882(-) m6A CDS//exon       24981863//26404942
chr7:107575907-107575908(-) m6A CDS//exon       24981863//26404942
chr7:107575937-107575938(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107575986-107575987(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107576024-107576025(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107576748-107576749(-) m6A exon//intron       27773535
chr7:107576772-107576773(-) m6A exon//intron       27773535
chr7:107576780-107576781(-) m6A exon//intron       27773535
chr7:107577551-107577552(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107577571-107577572(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107577580-107577581(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107577596-107577597(-) m6A CDS//exon       24981863//26404942//27773535
chr7:107577615-107577616(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr7:107577631-107577632(-) m6A CDS//exon       24284625//24981863//26404942//27773535//22608085
chr7:107577718-107577719(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22608085
chr7:107580460-107580461(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//22608085
chr7:107580499-107580500(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:107580532-107580533(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:107580539-107580540(-) m6A CDS//exon       24284625//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr7:107580605-107580606(-) m6A CDS//exon       24284625//24981863//26404942//27773535//27371828//27773536//22575960//22608085
chr7:107582887-107582888(-) m6A exon//intron       24981863
chr7:107582902-107582903(-) m6A exon//intron       24981863
chr7:107582908-107582909(-) m6A exon//intron       24981863
chr7:107582943-107582944(-) m6A exon//intron       24981863
chr7:107591622-107591623(-) m6A exon//intron       24981863
chr7:107591690-107591691(-) m6A CDS//exon       27773535//22575960
chr7:107591704-107591705(-) m6A CDS//exon       27773535//22575960
chr7:107593982-107593983(-) m6A CDS//exon       27773535
chr7:107594032-107594033(-) m6A CDS//exon       27773535
chr7:107594073-107594074(-) m6A CDS//exon       27773535
chr7:107605062-107605063(-) m6A CDS       22575960
chr7:107613442-107613443(-) m6A CDS       22575960
chr7:107638833-107638834(-) m6A CDS       26404942
chr7:107642818-107642819(-) m6A CDS//intron       25456834//27773536
chr7:107642826-107642827(-) m6A CDS//intron       25456834//27773536
chr7:107643452-107643453(-) m6A 5'UTR//intron       25456834//24981863//27773536
chr7:107643545-107643546(-) m6A 5'UTR//intron       24981863
chr7:107643618-107643619(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-548a-3p
Exosome Pooled sera     27278097
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Follicular fluid     23666971
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
LAMB1
Chromatin K562 cells     -
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Insoluble cytoplasm K562 cells     -
Membrane K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -
Ribosome HEK-293 cells     22199352

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-548a-3p
Interactor2: LAMB1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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