Detail Information

Basic Information:


  VIRBase ID:  

HHID00060762

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-580-3p:           S1PR1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-580-3p S1PR1
miRBase
Accession/Entrez ID		 MIMAT0003245 1901
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CD363//CHEDG1//D1S3362//ECGF1//EDG-1//EDG1//S1P1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-580-3p
rs1277701030 chr5:36147917    C/T
rs748870940 chr5:36147915    T/C
rs771814640 chr5:36147913    GATTCATC/G
rs779426932 chr5:36147912    T/C
rs867183932 chr5:36147914    A/T
rs894333782 chr5:36147913    G/A
rs1211215739 chr5:36147923    T/A
rs1258987446 chr5:36147924    C/T
rs1372042495 chr5:36147922    T/G
rs1485122288 chr5:36147921    A/C

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase S1PR1
chr1:101702480-101702481(+) m6A 5'UTR       -
chr1:101702499-101702500(+) m6A 5'UTR//exon       -
chr1:101702535-101702536(+) m6A 5'UTR//exon       -
chr1:101704658-101704659(+) m6A CDS//exon       22608085
chr1:101704667-101704668(+) m6A CDS//exon       24981863//22608085
chr1:101704677-101704678(+) m6A CDS//exon       24981863//22608085
chr1:101704727-101704728(+) m6A CDS//exon       24981863//22608085
chr1:101704756-101704757(+) m6A CDS//exon       24981863//22608085
chr1:101704811-101704812(+) m6A CDS//exon       24981863//22608085
chr1:101704989-101704990(+) m6A CDS//exon       24981863//22608085
chr1:101705087-101705088(+) m6A CDS       24981863//22608085
chr1:101705227-101705228(+) m6A CDS       24981863
chr1:101705258-101705259(+) m6A CDS       24981863
chr1:101705308-101705309(+) m6A CDS       -
chr1:101705395-101705396(+) m6A CDS       -
chr1:101705543-101705544(+) m6A CDS       25456834//24981863//22575960//22608085
chr1:101705606-101705607(+) m6A CDS       25456834//24981863//22575960//22608085
chr1:101705639-101705640(+) m6A CDS       25456834//24981863//22575960//22608085
chr1:101705650-101705651(+) m6A CDS       25456834//24981863//22608085
chr1:101705690-101705691(+) m6A 3'UTR       25456834//24981863//22608085
chr1:101705828-101705829(+) m6A 3'UTR       25456834//24981863//22608085
chr1:101705875-101705876(+) m6A 3'UTR       25456834//24981863//22608085
chr1:101706012-101706013(+) m6A 3'UTR       24981863
chr1:101706085-101706086(+) m6A 3'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-580-3p
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
S1PR1
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-580-3p
Interactor2: S1PR1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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