Detail Information

Basic Information:


  VIRBase ID:  

HHID00060753

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-579-3p:           BTLA:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-579-3p BTLA
miRBase
Accession/Entrez ID		 MIMAT0003244 151888
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BTLA1//CD272

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-579-3p
rs1165224671 chr5:32394404    T/C
rs1190752232 chr5:32394395    C/T
rs1404190650 chr5:32394401    T/C
rs1412824363 chr5:32394357    AAAGACCATAGACTGTAGTAAGTTGATGCAAAAATAATCGCGG/A
rs1415619084 chr5:32394406    C/T
rs376231726 chr5:32394397    C/T
rs768681140 chr5:32394396    G/A
rs939936972 chr5:32394398    G/A
rs1487016067 chr5:32394410    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BTLA
chr3:112217804(-) A-I      intronic
chr3:112216890(-) A-I      intronic
chr3:112206288(-) A-I      intronic
chr3:112207688(-) A-I      intronic
chr3:112217772(-) A-I      intronic
chr3:112216921(-) A-I      intronic
chr3:112216924(-) A-I      intronic
chr3:112216928(-) A-I      intronic
chr3:112216931(-) A-I      intronic
chr3:112216992(-) A-I      intronic
chr3:112216996(-) A-I      intronic
chr3:112217753(-) A-I      intronic
chr3:112217779(-) A-I      intronic
chr3:112217831(-) A-I      intronic
chr3:112217832(-) A-I      intronic
chr3:112217849(-) A-I      intronic
chr3:112206269(-) A-I      intronic
chr3:112206283(-) A-I      intronic
chr3:112206292(-) A-I      intronic
chr3:112206310(-) A-I      intronic
chr3:112217814(-) A-I      intronic
chr3:112202667(-) A-I      intronic
chr3:112202715(-) A-I      intronic
chr3:112202728(-) A-I      intronic
chr3:112204506(-) A-I      intronic
chr3:112206188(-) A-I      intronic
chr3:112206284(-) A-I      intronic
chr3:112206308(-) A-I      intronic
chr3:112215667(-) A-I      intronic
chr3:112212895(-) A-I      intronic
chr3:112212788(-) A-I      intronic
chr3:112212734(-) A-I      intronic
chr3:112212548(-) A-I      intronic
chr3:112212527(-) A-I      intronic
chr3:112212413(-) A-I      intronic
chr3:112206393(-) A-I      intronic
chr3:112191494(-) A-I      intronic
chr3:112215826(-) A-I      intronic
chr3:112215817(-) A-I      intronic
chr3:112191301(-) A-I      intronic
chr3:112192519(-) A-I      intronic
chr3:112212608(-) A-I      intronic
chr3:112206369(-) A-I      intronic
chr3:112206350(-) A-I      intronic
chr3:112202227(-) A-I      intronic
chr3:112202648(-) A-I      intronic
chr3:112206388(-) A-I      intronic
chr3:112191352(-) A-I      intronic
chr3:112215867(-) A-I      intronic
chr3:112191287(-) A-I      intronic
chr3:112204056(-) A-I      intronic
chr3:112216813(-) A-I      intronic
chr3:112192626(-) A-I      intronic
chr3:112191419(-) A-I      intronic
chr3:112206380(-) A-I      intronic
chr3:112191381(-) A-I      intronic
chr3:112192600(-) A-I      intronic
chr3:112212833(-) A-I      intronic
chr3:112212793(-) A-I      intronic
chr3:112204013(-) A-I      intronic
chr3:112204942(-) A-I      intronic
chr3:112206349(-) A-I      intronic
chr3:112206229(-) A-I      intronic
chr3:112206320(-) A-I      intronic
chr3:112192656(-) A-I      intronic
chr3:112191464(-) A-I      intronic
chr3:112212519(-) A-I      intronic
chr3:112206175(-) A-I      intronic
chr3:112207147(-) A-I      intronic
chr3:112192564(-) A-I      intronic
chr3:112191454(-) A-I      intronic
chr3:112212573(-) A-I      intronic
chr3:112204440(-) A-I      intronic
chr3:112191299(-) A-I      intronic
chr3:112204482(-) A-I      intronic
chr3:112207151(-) A-I      intronic
chr3:112212362(-) A-I      intronic
chr3:112192735(-) A-I      intronic
chr3:112202612(-) A-I      intronic
chr3:112204483(-) A-I      intronic
chr3:112204538(-) A-I      intronic
chr3:112212604(-) A-I      intronic
chr3:112212495(-) A-I      intronic
chr3:112192538(-) A-I      intronic
chr3:112207529(-) A-I      intronic
chr3:112207298(-) A-I      intronic
chr3:112192651(-) A-I      intronic
chr3:112212894(-) A-I      intronic
chr3:112191378(-) A-I      intronic
chr3:112215807(-) A-I      intronic
chr3:112202268(-) A-I      intronic
chr3:112212622(-) A-I      intronic
chr3:112192627(-) A-I      intronic
chr3:112202732(-) A-I      intronic
chr3:112206276(-) A-I      intronic
chr3:112212424(-) A-I      intronic
chr3:112204842(-) A-I      intronic
chr3:112212900(-) A-I      intronic
chr3:112192554(-) A-I      intronic
chr3:112202733(-) A-I      intronic
chr3:112212553(-) A-I      intronic
chr3:112191479(-) A-I      intronic
chr3:112212835(-) A-I      intronic
chr3:112212528(-) A-I      intronic
chr3:112215703(-) A-I      intronic
chr3:112192599(-) A-I      intronic
chr3:112206260(-) A-I      intronic
chr3:112212542(-) A-I      intronic
chr3:112192736(-) A-I      intronic
chr3:112192658(-) A-I      intronic
chr3:112216796(-) A-I      intronic
chr3:112212517(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BTLA
chr3:112191287(-) A-I intron -    22327324
chr3:112191497(-) A-I intron -    22327324
chr3:112192744(-) A-I intron -    22327324
chr3:112191287(-) A-G intron -    22484847
chr3:112191364(-) A-G intron -    22484847
chr3:112191378(-) A-G intron -    22484847
chr3:112191433(-) A-G intron -    22484847
chr3:112191441(-) A-G intron -    22484847
chr3:112191454(-) A-G intron -    22484847
chr3:112191458(-) A-G intron -    22484847
chr3:112191464(-) A-G intron -    22484847
chr3:112191479(-) A-G intron -    22484847
chr3:112191497(-) A-G intron -    22484847
chr3:112192538(-) A-G intron -    22484847
chr3:112192576(-) A-G intron -    22484847
chr3:112192583(-) A-G intron -    22484847
chr3:112192586(-) A-G intron -    22484847
chr3:112192656(-) A-G intron -    22484847
chr3:112192657(-) A-G intron -    22484847
chr3:112192658(-) A-G intron -    22484847
chr3:112192660(-) T-C intron -    22484847
chr3:112192744(-) A-G intron -    22484847
chr3:112202612(-) A-G intron -    22484847
chr3:112202703(-) A-G intron -    22484847
chr3:112202732(-) A-G intron -    22484847
chr3:112202733(-) A-G intron -    22484847
chr3:112202763(-) A-G intron -    22484847
chr3:112204482(-) A-G intron -    22484847
chr3:112204770(-) A-G intron -    22484847
chr3:112204842(-) A-G intron -    22484847
chr3:112206229(-) A-G intron -    22484847
chr3:112206260(-) A-G intron -    22484847
chr3:112206349(-) A-G intron -    22484847
chr3:112206373(-) C-T intron -    22484847
chr3:112206380(-) A-G intron -    22484847
chr3:112207693(-) A-G intron -    22484847
chr3:112212495(-) A-G intron -    22484847
chr3:112212513(-) A-G intron -    22484847
chr3:112212516(-) A-G intron -    22484847
chr3:112212517(-) A-G intron -    22484847
chr3:112212519(-) A-G intron -    22484847
chr3:112212528(-) A-G intron -    22484847
chr3:112212542(-) A-G intron -    22484847
chr3:112212553(-) A-G intron -    22484847
chr3:112212573(-) A-G intron -    22484847
chr3:112212604(-) A-G intron -    22484847
chr3:112212621(-) A-G intron -    22484847
chr3:112212622(-) A-G intron -    22484847
chr3:112212770(-) A-G intron -    22484847
chr3:112212785(-) A-G intron -    22484847
chr3:112212833(-) A-G intron -    22484847
chr3:112212835(-) A-G intron -    22484847
chr3:112212894(-) A-G intron -    22484847
chr3:112212900(-) A-G intron -    22484847
chr3:112215802(-) A-G intron -    22484847
chr3:112215807(-) A-G intron -    22484847
chr3:112215830(-) A-G intron -    22484847
chr3:112216796(-) A-G intron -    22484847
chr3:112216813(-) A-G intron -    22484847
chr3:112216826(-) G-A intron -    22484847
chr3:112216878(-) A-G intron -    22484847
chr3:112216932(-) A-G intron -    22484847
chr3:112216944(-) A-G intron -    22484847
chr3:112217003(-) A-G intron -    22484847
chr3:112217044(-) A-G intron -    22484847
chr3:112217060(-) A-G intron -    22484847
chr3:112217065(-) A-G intron -    22484847
chr3:112217740(-) A-G intron -    22484847
chr3:112217884(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BTLA
chr3:112184930-112184931(-) m6A 3'UTR//exon       28052920
chr3:112185014-112185015(-) m6A CDS//exon       28052920//27371828
chr3:112185021-112185022(-) m6A CDS//exon       28052920//27371828
chr3:112185026-112185027(-) m6A CDS//exon       28052920//27371828
chr3:112185042-112185043(-) m6A CDS//exon       28052920//27371828
chr3:112185072-112185073(-) m6A CDS//exon       28052920//27371828
chr3:112185157-112185158(-) m6A CDS//exon       28052920//27371828
chr3:112185202-112185203(-) m6A CDS//exon       28052920//27371828
chr3:112188637-112188638(-) m6A CDS//exon       28052920
chr3:112188833-112188834(-) m6A exon//intron       28052920
chr3:112188848-112188849(-) m6A exon//intron       28052920
chr3:112188919-112188920(-) m6A exon//intron       -
chr3:112190152-112190153(-) m6A CDS//intron       -
chr3:112198395-112198396(-) m6A CDS       -
chr3:112198423-112198424(-) m6A CDS       -
chr3:112198449-112198450(-) m6A CDS       28052920
chr3:112198461-112198462(-) m6A CDS       28052920
chr3:112198475-112198476(-) m6A CDS       28052920
chr3:112198539-112198540(-) m6A CDS       28052920
chr3:112198569-112198570(-) m6A CDS       28052920
chr3:112198578-112198579(-) m6A CDS       28052920
chr3:112218125-112218126(-) m6A CDS       -
chr3:112218134-112218135(-) m6A CDS       -
chr3:112218177-112218178(-) m6A CDS       -
chr3:112218198-112218199(-) m6A CDS       -
chr3:112218286-112218287(-) m6A 5'UTR       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-579-3p
Exosome Lung adenocarcinoma epithelial cell line (A549)     20615901
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Lung epithelial carcinoma cell line (A549)     20615901
Microvesicle Fibroblasts|Mesenchymal stem cells     -
BTLA
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-579-3p
Interactor2: BTLA

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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