Detail Information

Basic Information:


  VIRBase ID:  

HHID00060735

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-579-3p:           SLC7A9:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-579-3p SLC7A9
miRBase
Accession/Entrez ID		 MIMAT0003244 11136
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BAT1//CSNU3

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-579-3p
rs1165224671 chr5:32394404    T/C
rs1190752232 chr5:32394395    C/T
rs1404190650 chr5:32394401    T/C
rs1412824363 chr5:32394357    AAAGACCATAGACTGTAGTAAGTTGATGCAAAAATAATCGCGG/A
rs1415619084 chr5:32394406    C/T
rs376231726 chr5:32394397    C/T
rs768681140 chr5:32394396    G/A
rs939936972 chr5:32394398    G/A
rs1487016067 chr5:32394410    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR SLC7A9
chr19:33325789(-) A-I      intronic
chr19:33325428(-) A-I      intronic
chr19:33325414(-) A-I      intronic
chr19:33323095(-) A-I      intronic
chr19:33345011(-) A-I      intronic
chr19:33345120(-) A-I      intronic
chr19:33345124(-) A-I      intronic
chr19:33345571(-) A-I      intronic
chr19:33348268(-) A-I      intronic
chr19:33333602(-) A-I      intronic
chr19:33343204(-) A-I      intronic
chr19:33343224(-) A-I      intronic
chr19:33345199(-) A-I      intronic
chr19:33343392(-) A-I      intronic
chr19:33335570(-) A-I      intronic
chr19:33326855(-) A-I      intronic
chr19:33356325(-) A-I      intronic
chr19:33335564(-) A-I      intronic
chr19:33347644(-) A-I      intronic
chr19:33345631(-) A-I      intronic
chr19:33358240(-) A-I      intronic
chr19:33327029(-) A-I      intronic
chr19:33327205(-) A-I      intronic
chr19:33323763(-) A-I      intronic
chr19:33356793(-) A-I      intronic
chr19:33358242(-) A-I      intronic
chr19:33345016(-) A-I      intronic
chr19:33348187(-) A-I      intronic
chr19:33356760(-) A-I      intronic
chr19:33358151(-) A-I      intronic
chr19:33356299(-) A-I      intronic
chr19:33325292(-) A-I      intronic
chr19:33356813(-) A-I      intronic

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-579-3p
Exosome Lung adenocarcinoma epithelial cell line (A549)     20615901
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Lung epithelial carcinoma cell line (A549)     20615901
Microvesicle Fibroblasts|Mesenchymal stem cells     -
SLC7A9
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-579-3p
Interactor2: SLC7A9

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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