Basic Information:

  VIRBase ID:  

HHID00060724

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-579-3p:  MIMAT0003244          CRYBG1:  NM_001371242     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-579-3p	CRYBG1
miRBase Accession/Entrez ID	MIMAT0003244	202
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	AIM1//ST4

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-579-3p	rs1165224671 chr5:32394404    T/C rs1190752232 chr5:32394395    C/T rs1404190650 chr5:32394401    T/C rs1412824363 chr5:32394357    AAAGACCATAGACTGTAGTAAGTTGATGCAAAAATAATCGCGG/A rs1415619084 chr5:32394406    C/T rs376231726 chr5:32394397    C/T rs768681140 chr5:32394396    G/A rs939936972 chr5:32394398    G/A rs1487016067 chr5:32394410    A/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CRYBG1	chr6:107006655(+) A-I      intronic chr6:107006636(+) A-I      intronic chr6:106966740(+) A-I      intronic chr6:106966737(+) A-I      intronic chr6:106966688(+) A-I      intronic chr6:107006642(+) A-I      intronic chr6:107006654(+) A-I      intronic chr6:107006656(+) A-I      intronic chr6:106966703(+) A-I      intronic chr6:107006637(+) A-I      intronic chr6:107006652(+) A-I      intronic chr6:106971624(+) A-I      intronic chr6:106885373(+) A-I      intronic chr6:107006808(+) A-I      intronic chr6:107006707(+) A-I      intronic chr6:106972183(+) A-I      intronic chr6:106971749(+) A-I      intronic chr6:106972188(+) A-I      intronic chr6:107006695(+) A-I      intronic chr6:106972387(+) A-I      intronic chr6:106972312(+) A-I      intronic chr6:107006821(+) A-I      intronic chr6:106972294(+) A-I      intronic chr6:106971790(+) A-I      intronic chr6:107014486(+) A-I      intronic chr6:106972250(+) A-I      intronic chr6:107014403(+) A-I      intronic chr6:107002488(+) A-I      intronic chr6:106972227(+) A-I      intronic chr6:106878292(+) A-I      intronic chr6:106971707(+) A-I      intronic chr6:107005359(+) A-I      intronic chr6:107005341(+) A-I      intronic chr6:107005451(+) A-I      intronic chr6:107017222(+) A-I      3'UTR chr6:107017225(+) A-I      3'UTR chr6:106972356(+) A-I      intronic chr6:106841644(+) A-I      intronic chr6:106971706(+) A-I      intronic chr6:107005428(+) A-I      intronic chr6:106972285(+) A-I      intronic chr6:106971660(+) A-I      intronic chr6:107006596(+) A-I      intronic chr6:106972237(+) A-I      intronic chr6:106972245(+) A-I      intronic chr6:106972182(+) A-I      intronic chr6:107006753(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-579-3p	Exosome Lung adenocarcinoma epithelial cell line (A549)     20615901 Exosome Plasma     24683445 Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Lung epithelial carcinoma cell line (A549)     20615901 Microvesicle Fibroblasts|Mesenchymal stem cells     -
	CRYBG1	Cytosol HCC cell line (HepG2)     - Exosome Blood     - Nucleus HCC cell line (HepG2)     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-579-3p
Interactor2: CRYBG1

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.