Detail Information

Basic Information:


  VIRBase ID:  

HHID00059706

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-519d-3p:           VTI1A:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-519d-3p VTI1A
miRBase
Accession/Entrez ID
MIMAT0002853 143187
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - MMDS3//MVti1//Vti1-rp2//VTI1RP2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-519d-3p
rs1031566931 chr19:53713420    T/A
rs116796400 chr19:53713416    A/G
rs1177367352 chr19:53713409    T/A
rs1362826944 chr19:53713419    G/T
rs1443130720 chr19:53713413    T/A
rs748935087 chr19:53713417    G/T
rs752635598 chr19:53713417    G/GTGTTACCCAAAGTGTTACCCAAACGTAACCCAA
rs754470034 chr19:53713415    T/TACCAA
rs754470034 chr19:53713415    T/TA
rs754629979 chr19:53713421    G/T
rs755601254 chr19:53713414    T/A
rs752048127 chr19:53713406    G/T
rs764695340 chr19:53713405    T/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR VTI1A
chr10:114520492(+) A-I      intronic
chr10:114520498(+) A-I      intronic
chr10:114469871(+) A-I      intronic
chr10:114520509(+) A-I      intronic
chr10:114448329(+) A-I      intronic
chr10:114336040(+) A-I      intronic
chr10:114537741(+) A-I      intronic
chr10:114537750(+) A-I      intronic
chr10:114539916(+) A-I      intronic
chr10:114336039(+) A-I      intronic
chr10:114571393(+) A-I      intronic
chr10:114540740(+) A-I      intronic
chr10:114561801(+) A-I      intronic
chr10:114540744(+) A-I      intronic
chr10:114443695(+) A-I      intronic
chr10:114540804(+) A-I      intronic
chr10:114540845(+) A-I      intronic
chr10:114541542(+) A-I      intronic
chr10:114561871(+) A-I      intronic
chr10:114555293(+) A-I      intronic
chr10:114555294(+) A-I      intronic
chr10:114555297(+) A-I      intronic
chr10:114462401(+) A-I      intronic
chr10:114555298(+) A-I      intronic
chr10:114566057(+) A-I      intronic
chr10:114555948(+) A-I      intronic
chr10:114556115(+) A-I      intronic
chr10:114561745(+) A-I      intronic
chr10:114564671(+) A-I      intronic
chr10:114562891(+) A-I      intronic
chr10:114539974(+) A-I      intronic
chr10:114562973(+) A-I      intronic
chr10:114563061(+) A-I      intronic
chr10:114563062(+) A-I      intronic
chr10:114448518(+) A-I      intronic
chr10:114563089(+) A-I      intronic
chr10:114563123(+) A-I      intronic
chr10:114259985(+) A-I      intronic
chr10:114567903(+) A-I      intronic
chr10:114448299(+) A-I      intronic
chr10:114335986(+) A-I      intronic
chr10:114335919(+) A-I      intronic
chr10:114510227(+) A-I      intronic
chr10:114563384(+) A-I      intronic
chr10:114328106(+) A-I      intronic
chr10:114450970(+) A-I      intronic
chr10:114563404(+) A-I      intronic
chr10:114563450(+) A-I      intronic
chr10:114571355(+) A-I      intronic
chr10:114564706(+) A-I      intronic
chr10:114564720(+) A-I      intronic
chr10:114564859(+) A-I      intronic
chr10:114357007(+) A-I      intronic
chr10:114517406(+) A-I      intronic
chr10:114567721(+) A-I      intronic
chr10:114332334(+) A-I      intronic
chr10:114567749(+) A-I      intronic
chr10:114567775(+) A-I      intronic
chr10:114447910(+) A-I      intronic
chr10:114567834(+) A-I      intronic
chr10:114567848(+) A-I      intronic
chr10:114564699(+) A-I      intronic
chr10:114540909(+) A-I      intronic
chr10:114463143(+) A-I      intronic
chr10:114447896(+) A-I      intronic
chr10:114563382(+) A-I      intronic
chr10:114447842(+) A-I      intronic
chr10:114540807(+) A-I      intronic
chr10:114357368(+) A-I      intronic
chr10:114554090(+) A-I      intronic
chr10:114564845(+) A-I      intronic
chr10:114448398(+) A-I      intronic
chr10:114448422(+) A-I      intronic
chr10:114448481(+) A-I      intronic
chr10:114448545(+) A-I      intronic
chr10:114326989(+) A-I      intronic
chr10:114326972(+) A-I      intronic
chr10:114326914(+) A-I      intronic
chr10:114454473(+) A-I      intronic
chr10:114454503(+) A-I      intronic
chr10:114454514(+) A-I      intronic
chr10:114326840(+) A-I      intronic
chr10:114326931(+) A-I      intronic
chr10:114454542(+) A-I      intronic
chr10:114447838(+) A-I      intronic
chr10:114326901(+) A-I      intronic
chr10:114307262(+) A-I      intronic
chr10:114454546(+) A-I      intronic
chr10:114307180(+) A-I      intronic
chr10:114307178(+) A-I      intronic
chr10:114454572(+) A-I      intronic
chr10:114454585(+) A-I      intronic
chr10:114326868(+) A-I      intronic
chr10:114454607(+) A-I      intronic
chr10:114454608(+) A-I      intronic
chr10:114454613(+) A-I      intronic
chr10:114447813(+) A-I      intronic
chr10:114307177(+) A-I      intronic
chr10:114517244(+) A-I      intronic
chr10:114454621(+) A-I      intronic
chr10:114454634(+) A-I      intronic
chr10:114454643(+) A-I      intronic
chr10:114454672(+) A-I      intronic
chr10:114459328(+) A-I      intronic
chr10:114459443(+) A-I      intronic
chr10:114462202(+) A-I      intronic
chr10:114462240(+) A-I      intronic
chr10:114462257(+) A-I      intronic
chr10:114462283(+) A-I      intronic
chr10:114462296(+) A-I      intronic
chr10:114462462(+) A-I      intronic
chr10:114462511(+) A-I      intronic
chr10:114444397(+) A-I      intronic
chr10:114462542(+) A-I      intronic
chr10:114462588(+) A-I      intronic
chr10:114462592(+) A-I      intronic
chr10:114463049(+) A-I      intronic
chr10:114463126(+) A-I      intronic
chr10:114463128(+) A-I      intronic
chr10:114463168(+) A-I      intronic
chr10:114463195(+) A-I      intronic
chr10:114463197(+) A-I      intronic
chr10:114463206(+) A-I      intronic
chr10:114463275(+) A-I      intronic
chr10:114463313(+) A-I      intronic
chr10:114328108(+) A-I      intronic
chr10:114464709(+) A-I      intronic
chr10:114464711(+) A-I      intronic
chr10:114537615(+) A-I      intronic
chr10:114464747(+) A-I      intronic
chr10:114464751(+) A-I      intronic
chr10:114464849(+) A-I      intronic
chr10:114464914(+) A-I      intronic
chr10:114464935(+) A-I      intronic
chr10:114464937(+) A-I      intronic
chr10:114310869(+) A-I      intronic
chr10:114466940(+) A-I      intronic
chr10:114554136(+) A-I      intronic
chr10:114459337(+) A-I      intronic
chr10:114517309(+) A-I      intronic
chr10:114479399(+) A-I      intronic
chr10:114218482(+) A-I      intronic
chr10:114479435(+) A-I      intronic
chr10:114479445(+) A-I      intronic
chr10:114479447(+) A-I      intronic
chr10:114479488(+) A-I      intronic
chr10:114444327(+) A-I      intronic
chr10:114479557(+) A-I      intronic
chr10:114307171(+) A-I      intronic
chr10:114479567(+) A-I      intronic
chr10:114306918(+) A-I      intronic
chr10:114561778(+) A-I      intronic
chr10:114491136(+) A-I      intronic
chr10:114462204(+) A-I      intronic
chr10:114444323(+) A-I      intronic
chr10:114306903(+) A-I      intronic
chr10:114444298(+) A-I      intronic
chr10:114357001(+) A-I      intronic
chr10:114491156(+) A-I      intronic
chr10:114491170(+) A-I      intronic
chr10:114491213(+) A-I      intronic
chr10:114306902(+) A-I      intronic
chr10:114444272(+) A-I      intronic
chr10:114494578(+) A-I      intronic
chr10:114306782(+) A-I      intronic
chr10:114443691(+) A-I      intronic
chr10:114491214(+) A-I      intronic
chr10:114306768(+) A-I      intronic
chr10:114304106(+) A-I      intronic
chr10:114304101(+) A-I      intronic
chr10:114491227(+) A-I      intronic
chr10:114304089(+) A-I      intronic
chr10:114493700(+) A-I      intronic
chr10:114443651(+) A-I      intronic
chr10:114351175(+) A-I      intronic
chr10:114304076(+) A-I      intronic
chr10:114328105(+) A-I      intronic
chr10:114443595(+) A-I      intronic
chr10:114254337(+) A-I      intronic
chr10:114441074(+) A-I      intronic
chr10:114493763(+) A-I      intronic
chr10:114494435(+) A-I      intronic
chr10:114567403(+) A-I      intronic
chr10:114494455(+) A-I      intronic
chr10:114466939(+) A-I      intronic
chr10:114244929(+) A-I      intronic
chr10:114494486(+) A-I      intronic
chr10:114494505(+) A-I      intronic
chr10:114244911(+) A-I      intronic
chr10:114244820(+) A-I      intronic
chr10:114230624(+) A-I      intronic
chr10:114441006(+) A-I      intronic
chr10:114494541(+) A-I      intronic
chr10:114494588(+) A-I      intronic
chr10:114479423(+) A-I      intronic
chr10:114500123(+) A-I      intronic
chr10:114441005(+) A-I      intronic
chr10:114500178(+) A-I      intronic
chr10:114500278(+) A-I      intronic
chr10:114328041(+) A-I      intronic
chr10:114440982(+) A-I      intronic
chr10:114501094(+) A-I      intronic
chr10:114516607(+) A-I      intronic
chr10:114440914(+) A-I      intronic
chr10:114516620(+) A-I      intronic
chr10:114459757(+) A-I      intronic
chr10:114516630(+) A-I      intronic
chr10:114440898(+) A-I      intronic
chr10:114516699(+) A-I      intronic
chr10:114517281(+) A-I      intronic
chr10:114517283(+) A-I      intronic
chr10:114494539(+) A-I      intronic
chr10:114494551(+) A-I      intronic
chr10:114517328(+) A-I      intronic
chr10:114517354(+) A-I      intronic
chr10:114520497(+) A-I      intronic
chr10:114525126(+) A-I      intronic
chr10:114494467(+) A-I      intronic
chr10:114440854(+) A-I      intronic
chr10:114536537(+) A-I      intronic
chr10:114536579(+) A-I      intronic
chr10:114536586(+) A-I      intronic
chr10:114536622(+) A-I      intronic
chr10:114536646(+) A-I      intronic
chr10:114536671(+) A-I      intronic
chr10:114467067(+) A-I      intronic
chr10:114537642(+) A-I      intronic
chr10:114537702(+) A-I      intronic
chr10:114537706(+) A-I      intronic
chr10:114537714(+) A-I      intronic
chr10:114463167(+) A-I      intronic
chr10:114412468(+) A-I      intronic
chr10:114459470(+) A-I      intronic
chr10:114412345(+) A-I      intronic
chr10:114380455(+) A-I      intronic
chr10:114380428(+) A-I      intronic
chr10:114359484(+) A-I      intronic
chr10:114359480(+) A-I      intronic
chr10:114359478(+) A-I      intronic
chr10:114359371(+) A-I      intronic
chr10:114500305(+) A-I      intronic
chr10:114412427(+) A-I      intronic
chr10:114564877(+) A-I      intronic
chr10:114443547(+) A-I      intronic
chr10:114357051(+) A-I      intronic
chr10:114351204(+) A-I      intronic
chr10:114351199(+) A-I      intronic
chr10:114351148(+) A-I      intronic
chr10:114351092(+) A-I      intronic
chr10:114448541(+) A-I      intronic
chr10:114463187(+) A-I      intronic
chr10:114336041(+) A-I      intronic
chr10:114453845(+) A-I      intronic
chr10:114523178(+) A-I      intronic
chr10:114561861(+) A-I      intronic
chr10:114517274(+) A-I      intronic
chr10:114357383(+) A-I      intronic
chr10:114247063(+) A-I      intronic
chr10:114540743(+) A-I      intronic
chr10:114453789(+) A-I      intronic
chr10:114568130(+) A-I      intronic
chr10:114539854(+) A-I      intronic
chr10:114501093(+) A-I      intronic
chr10:114466938(+) A-I      intronic
chr10:114563010(+) A-I      intronic
chr10:114463270(+) A-I      intronic
chr10:114463205(+) A-I      intronic
chr10:114443582(+) A-I      intronic
chr10:114357343(+) A-I      intronic
chr10:114406350(+) A-I      intronic
chr10:114261873(+) A-I      intronic
chr10:114514903(+) A-I      intronic
chr10:114304163(+) A-I      intronic
chr10:114356999(+) A-I      intronic
chr10:114335991(+) A-I      intronic
chr10:114516565(+) A-I      intronic
chr10:114555319(+) A-I      intronic
chr10:114556022(+) A-I      intronic
chr10:114561865(+) A-I      intronic
chr10:114555430(+) A-I      intronic
chr10:114372234(+) A-I      intronic
chr10:114562892(+) A-I      intronic
chr10:114564860(+) A-I      intronic
chr10:114372252(+) A-I      intronic
chr10:114306983(+) A-I      intronic
chr10:114353928(+) A-I      intronic
chr10:114555311(+) A-I      intronic
chr10:114537606(+) A-I      intronic
chr10:114494577(+) A-I      intronic
chr10:114516604(+) A-I      intronic
chr10:114564724(+) A-I      intronic
chr10:114307086(+) A-I      intronic
chr10:114555244(+) A-I      intronic
chr10:114491123(+) A-I      intronic
chr10:114307217(+) A-I      intronic
chr10:114571322(+) A-I      intronic
chr10:114567722(+) A-I      intronic
chr10:114541526(+) A-I      intronic
chr10:114520550(+) A-I      intronic
chr10:114567862(+) A-I      intronic
chr10:114440909(+) A-I      intronic
chr10:114566076(+) A-I      intronic
chr10:114459531(+) A-I      intronic
chr10:114466942(+) A-I      intronic
chr10:114541520(+) A-I      intronic
chr10:114441075(+) A-I      intronic
chr10:114562884(+) A-I      intronic
chr10:114328101(+) A-I      intronic
chr10:114443682(+) A-I      intronic
chr10:114510081(+) A-I      intronic
chr10:114567575(+) A-I      intronic
chr10:114564694(+) A-I      intronic
chr10:114536566(+) A-I      intronic
chr10:114555943(+) A-I      intronic
chr10:114441078(+) A-I      intronic
chr10:114454478(+) A-I      intronic
chr10:114539900(+) A-I      intronic
chr10:114562908(+) A-I      intronic
chr10:114462484(+) A-I      intronic
chr10:114555902(+) A-I      intronic
chr10:114540797(+) A-I      intronic
chr10:114540938(+) A-I      intronic
chr10:114563391(+) A-I      intronic
chr10:114326858(+) A-I      intronic
chr10:114567393(+) A-I      intronic
chr10:114453050(+) A-I      intronic
chr10:114564807(+) A-I      intronic
chr10:114500977(+) A-I      intronic
chr10:114491099(+) A-I      intronic
chr10:114372411(+) A-I      intronic
chr10:114443681(+) A-I      intronic
chr10:114463280(+) A-I      intronic
chr10:114561758(+) A-I      intronic
chr10:114463080(+) A-I      intronic
chr10:114396338(+) A-I      intronic
chr10:114304011(+) A-I      intronic
chr10:114441060(+) A-I      intronic
chr10:114540833(+) A-I      intronic
chr10:114372365(+) A-I      intronic
chr10:114463258(+) A-I      intronic
chr10:114448380(+) A-I      intronic
chr10:114463162(+) A-I      intronic
chr10:114510066(+) A-I      intronic
chr10:114326906(+) A-I      intronic
chr10:114539955(+) A-I      intronic
chr10:114556018(+) A-I      intronic
chr10:114457082(+) A-I      intronic
chr10:114567819(+) A-I      intronic
chr10:114567866(+) A-I      intronic
chr10:114501013(+) A-I      intronic
chr10:114462545(+) A-I      intronic
chr10:114520527(+) A-I      intronic
chr10:114457249(+) A-I      intronic
chr10:114462243(+) A-I      intronic
chr10:114539787(+) A-I      intronic
chr10:114450765(+) A-I      intronic
chr10:114536576(+) A-I      intronic
chr10:114454472(+) A-I      intronic
chr10:114537700(+) A-I      intronic
chr10:114326863(+) A-I      intronic
chr10:114328656(+) A-I      intronic
chr10:114440915(+) A-I      intronic
chr10:114462253(+) A-I      intronic
chr10:114328119(+) A-I      intronic
chr10:114443618(+) A-I      intronic
chr10:114326853(+) A-I      intronic
chr10:114561881(+) A-I      intronic
chr10:114261861(+) A-I      intronic
chr10:114556044(+) A-I      intronic
chr10:114218610(+) A-I      intronic
chr10:114517407(+) A-I      intronic
chr10:114372197(+) A-I      intronic
chr10:114555263(+) A-I      intronic
chr10:114462222(+) A-I      intronic
chr10:114567795(+) A-I      intronic
chr10:114459336(+) A-I      intronic
chr10:114464748(+) A-I      intronic
chr10:114462318(+) A-I      intronic
chr10:114537661(+) A-I      intronic
chr10:114464749(+) A-I      intronic
chr10:114567380(+) A-I      intronic
chr10:114441012(+) A-I      intronic
chr10:114479406(+) A-I      intronic
chr10:114412225(+) A-I      intronic
chr10:114564723(+) A-I      intronic
chr10:114462320(+) A-I      intronic
chr10:114440966(+) A-I      intronic
chr10:114564886(+) A-I      intronic
chr10:114516545(+) A-I      intronic
chr10:114459334(+) A-I      intronic
chr10:114464897(+) A-I      intronic
chr10:114371559(+) A-I      intronic
chr10:114459720(+) A-I      intronic
chr10:114568263(+) A-I      intronic
chr10:114536491(+) A-I      intronic
chr10:114463179(+) A-I      intronic
chr10:114500279(+) A-I      intronic
chr10:114563405(+) A-I      intronic
chr10:114500265(+) A-I      intronic
chr10:114459469(+) A-I      intronic
chr10:114510006(+) A-I      intronic
chr10:114470068(+) A-I      intronic
chr10:114555933(+) A-I      intronic
chr10:114462308(+) A-I      intronic
chr10:114530372(+) A-I      intronic
chr10:114462448(+) A-I      intronic
chr10:114567892(+) A-I      intronic
chr10:114462279(+) A-I      intronic
chr10:114517405(+) A-I      intronic
chr10:114326875(+) A-I      intronic
chr10:114412401(+) A-I      intronic
chr10:114443723(+) A-I      intronic
chr10:114441042(+) A-I      intronic
chr10:114457009(+) A-I      intronic
chr10:114463232(+) A-I      intronic
chr10:114500266(+) A-I      intronic
chr10:114571363(+) A-I      intronic
chr10:114462528(+) A-I      intronic
chr10:114494626(+) A-I      intronic
chr10:114491100(+) A-I      intronic
chr10:114304009(+) A-I      intronic
chr10:114462242(+) A-I      intronic
chr10:114517195(+) A-I      intronic
chr10:114562945(+) A-I      intronic
chr10:114539794(+) A-I      intronic
chr10:114412412(+) A-I      intronic
chr10:114441092(+) A-I      intronic
chr10:114359511(+) A-I      intronic
chr10:114304199(+) A-I      intronic
chr10:114306047(+) A-I      intronic
chr10:114463215(+) A-I      intronic
chr10:114448374(+) A-I      intronic
chr10:114571345(+) A-I      intronic
chr10:114328145(+) A-I      intronic
chr10:114562969(+) A-I      intronic
chr10:114569986(+) A-I      intronic
chr10:114326954(+) A-I      intronic
chr10:114556045(+) A-I      intronic
chr10:114457212(+) A-I      intronic
chr10:114564670(+) A-I      intronic
chr10:114448381(+) A-I      intronic
chr10:114564846(+) A-I      intronic
chr10:114491084(+) A-I      intronic
chr10:114448420(+) A-I      intronic
chr10:114246983(+) A-I      intronic
chr10:114470234(+) A-I      intronic
chr10:114328107(+) A-I      intronic
chr10:114441023(+) A-I      intronic
chr10:114326812(+) A-I      intronic
chr10:114441001(+) A-I      intronic
chr10:114216161(+) A-I      intronic
chr10:114540732(+) A-I      intronic
chr10:114384666(+) A-I      intronic
chr10:114568264(+) A-I      intronic
chr10:114504297(+) A-I      intronic
chr10:114555410(+) A-I      intronic
chr10:114412224(+) A-I      intronic
chr10:114443587(+) A-I      intronic
chr10:114501146(+) A-I      intronic
chr10:114540887(+) A-I      intronic
chr10:114541539(+) A-I      intronic
chr10:114520501(+) A-I      intronic
chr10:114247066(+) A-I      intronic
chr10:114567152(+) A-I      intronic
chr10:114565500(+) A-I      intronic
chr10:114565479(+) A-I      intronic
chr10:114567965(+) A-I      intronic
chr10:114516449(+) A-I      intronic
chr10:114467040(+) A-I      intronic
chr10:114448407(+) A-I      intronic
chr10:114520378(+) A-I      intronic
chr10:114440980(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED VTI1A
chr10:114561861(+) A-I intron -    15545495
chr10:114561865(+) A-I intron -    15545495
chr10:114561871(+) A-I intron -    15545495
chr10:114209254(+) A-I intron -    22327324
chr10:114209353(+) A-I intron -    22327324
chr10:114209390(+) A-I intron -    22327324
chr10:114209768(+) A-G intron -    21725310   //22484847
chr10:114209859(+) A-G intron -    21725310   //22484847
chr10:114243488(+) A-T intron -    22484847
chr10:114540732(+) A-G intron -    22484847
chr10:114565479(+) A-G intron -    22484847
chr10:114209254(+) A-G intron -    22484847
chr10:114209257(+) A-G intron -    22484847
chr10:114209347(+) A-G intron -    22484847
chr10:114209350(+) A-G intron -    22484847
chr10:114209352(+) A-G intron -    22484847
chr10:114209353(+) A-G intron -    22484847
chr10:114209390(+) A-G intron -    22484847
chr10:114209404(+) A-G intron -    22484847
chr10:114209432(+) A-G intron -    22484847
chr10:114209722(+) A-G intron -    22484847
chr10:114440909(+) A-G intron -    22484847
chr10:114443682(+) A-G intron -    22484847
chr10:114459336(+) A-G intron -    22484847
chr10:114459337(+) A-G intron -    22484847
chr10:114494578(+) A-G intron -    22484847
chr10:114536576(+) A-G intron -    22484847
chr10:114561801(+) A-G intron -    22484847
chr10:114567380(+) A-G intron -    22484847
chr10:114567795(+) A-G intron -    22484847
chr10:114567892(+) A-G intron -    22484847
chr10:114567903(+) A-G intron -    22484847
chr10:114516449(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase VTI1A
chr10:114206897-114206898(+) m6A exon       -
chr10:114208668-114208669(+) m6A exon//intron       24981863//22608085
chr10:114208758-114208759(+) m6A exon//intron       24981863//22608085
chr10:114208771-114208772(+) m6A exon//intron       24981863//22608085
chr10:114208931-114208932(+) m6A exon//intron       24981863
chr10:114220316-114220317(+) m6A CDS//exon       27773535
chr10:114220337-114220338(+) m6A CDS//exon       27773535
chr10:114224310-114224311(+) m6A CDS//exon       27773535
chr10:114224385-114224386(+) m6A CDS//exon       24981863//27773535
chr10:114224400-114224401(+) m6A CDS//exon       24981863//27773535
chr10:114224407-114224408(+) m6A CDS//exon       24981863//27773535
chr10:114245031-114245032(+) m6A exon//intron       24981863
chr10:114286918-114286919(+) m6A CDS//exon       24981863//27773535
chr10:114298054-114298055(+) m6A CDS//exon       24981863
chr10:114298085-114298086(+) m6A CDS//exon       24981863
chr10:114576427-114576428(+) m6A 3'UTR       24981863//22608085
chr10:114576498-114576499(+) m6A 3'UTR       24981863//22608085
chr10:114576592-114576593(+) m6A 3'UTR       24284625//24981863//22608085
chr10:114576657-114576658(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr10:114576765-114576766(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr10:114576878-114576879(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr10:114576897-114576898(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr10:114576905-114576906(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr10:114576979-114576980(+) m6A 3'UTR       24284625//24209618//24981863//22575960//22608085
chr10:114577055-114577056(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr10:114577102-114577103(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr10:114577154-114577155(+) m6A 3'UTR       24284625//24209618//24981863//22608085
chr10:114577280-114577281(+) m6A 3'UTR       24284625//24981863//22608085
chr10:114577312-114577313(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chr10:114577406-114577407(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr10:114577420-114577421(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chr10:114577496-114577497(+) m6A 3'UTR       24284625//24981863//22608085
chr10:114577552-114577553(+) m6A 3'UTR       24981863//22608085
chr10:114577681-114577682(+) m6A 3'UTR       24981863
chr10:114577686-114577687(+) m6A 3'UTR       24981863
chr10:114578075-114578076(+) m6A 3'UTR       -
chr10:114578374-114578375(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-519d-3p
Exosome Serum     18589210
Exosome Human mast cell line (HMC-1)     24009880
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts     -
VTI1A
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Membrane HCC cell line (HepG2)     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-519d-3p
Interactor2: VTI1A

Evidence Support:


Weak-Evidence HITS-CLIP
Support Database ViRBase

References:


PMID 22473208 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line Jijoye cells Interactor2 expression None
Description Our HITS-CLIP data yield 1185 human 3'UTRs targeted by members of the miR-17~92 cluster in Jijoye cells. Comparison to the 1664 3'UTRs targeted by EBV miRNAs reveals 740 shared genes (44% of EBV targets and 62% of miR-17~92 targets; Figure 6B and Supplementary Table 7). Thus, EBV miRNAs co-target a majority of miR-17~92 regulated mRNAs, which are assigned to a variety of pathways, most notably regulating transcription, apoptosis, and the cell cycle (Figure 6C). Similarly, other abundant immunologically relevant miRNAs, 142-3p and miR-155, co-target with EBV miRNAs a large fraction of their Ago-bound 3'UTRs, representing ~60% of the targets for each of these host miRNAs (Supplementary Figure 5).

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