Detail Information

Basic Information:


  VIRBase ID:  

HHID00058540

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-449a:           ARHGDIB:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-449a ARHGDIB
miRBase
Accession/Entrez ID
MIMAT0001541 397
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - D4//GDIA2//GDID4//Ly-GDI//LYGDI//RAP1GN1//RhoGDI2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-449a
rs1294048688 chr5:55170588    C/A
rs749773363 chr5:55170591    C/G
rs780146909 chr5:55170586    A/G
rs913642990 chr5:55170597    A/G
rs987840066 chr5:55170596    A/G
rs755430105 chr5:55170602    C/G
rs779429211 chr5:55170603    T/G
rs933108375 chr5:55170605    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ARHGDIB
chr12:15107838(-) A-I      intronic
chr12:15107822(-) A-I      intronic
chr12:15107821(-) A-I      intronic
chr12:15112136(-) A-I      intronic
chr12:15113674(-) A-I      intronic
chr12:15112132(-) A-I      intronic
chr12:15112131(-) A-I      intronic
chr12:15112108(-) A-I      intronic
chr12:15112096(-) A-I      intronic
chr12:15112199(-) A-I      intronic
chr12:15112240(-) A-I      intronic
chr12:15112135(-) A-I      intronic
chr12:15112187(-) A-I      intronic
chr12:15112190(-) A-I      intronic
chr12:15112204(-) A-I      intronic
chr12:15107826(-) A-I      intronic
chr12:15106925(-) A-I      intronic
chr12:15107835(-) A-I      intronic
chr12:15107818(-) A-I      intronic
chr12:15108520(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ARHGDIB
chr12:15107826(-) A-G intron -    22484847
chr12:15107835(-) A-G intron -    22484847
chr12:15108520(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ARHGDIB
chr12:15094975-15094976(-) m6A 3'UTR       27773535
chr12:15094986-15094987(-) m6A 3'UTR       27773535
chr12:15095008-15095009(-) m6A 3'UTR       27773535
chr12:15095276-15095277(-) m6A 3'UTR       27773535
chr12:15095290-15095291(-) m6A 3'UTR       27773535
chr12:15095463-15095464(-) m6A CDS//exon       26404942//27773535
chr12:15095486-15095487(-) m6A CDS//exon       26404942//27773535
chr12:15095507-15095508(-) m6A CDS//exon       26404942//27773535
chr12:15101758-15101759(-) m6A exon//intron       24981863
chr12:15101778-15101779(-) m6A exon//intron       24981863
chr12:15102743-15102744(-) m6A CDS//exon       24981863
chr12:15102757-15102758(-) m6A CDS//exon       24981863
chr12:15103530-15103531(-) m6A CDS//exon       24981863//28052920//26404942//27371828
chr12:15103590-15103591(-) m6A CDS//exon       24981863//28052920//26404942//27371828
chr12:15114182-15114183(-) m6A 5'UTR//intron       24981863
chr12:15114491-15114492(-) m6A 5'UTR//exon//intron       24981863
chr12:15114506-15114507(-) m6A 5'UTR//exon//intron       24981863
chr12:15114573-15114574(-) m6A 5'UTR//intron       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-449a
Exosome Serum     18589210
Exosome Jurkat-derived T cell line (J77cl20)     21505438
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Seminal plasma     23539611
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
Mitochondrion Cell line (HEK-293)     22984580
ARHGDIB
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-449a
Interactor2: ARHGDIB

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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