Detail Information

Basic Information:


  VIRBase ID:  

HHID00054057

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320a-3p:           KLF13:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320a-3p KLF13
miRBase
Accession/Entrez ID		 MIMAT0000510 51621
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BTEB3//FKLF2//NSLP1//RFLAT-1//RFLAT1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320a-3p
rs1276783280 chr8:22244983    T/C
rs1304651256 chr8:22244976    C/A
rs1335522641 chr8:22244984    C/G
rs1342806696 chr8:22244985    A/T
rs1380599305 chr8:22244977    G/A
rs376090584 chr8:22244982    C/T
rs745462427 chr8:22244996    T/A
rs745462427 chr8:22244996    T/C
rs778232802 chr8:22244988    C/A
rs778232802 chr8:22244988    C/T
rs1029283088 chr8:22244995    T/C
rs1272164828 chr8:22244990    A/G
rs1295910991 chr8:22244991    G/C
rs1311220991 chr8:22244994    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KLF13
chr15:31644060(+) A-I      intronic
chr15:31662831(+) A-I      intronic
chr15:31662802(+) A-I      intronic
chr15:31662788(+) A-I      intronic
chr15:31662739(+) A-I      intronic
chr15:31660866(+) A-I      intronic
chr15:31646713(+) A-I      intronic
chr15:31648707(+) A-I      intronic
chr15:31648596(+) A-I      intronic
chr15:31646864(+) A-I      intronic
chr15:31646835(+) A-I      intronic
chr15:31646822(+) A-I      intronic
chr15:31646736(+) A-I      intronic
chr15:31646709(+) A-I      intronic
chr15:31626692(+) A-I      intronic
chr15:31646684(+) A-I      intronic
chr15:31646606(+) A-I      intronic
chr15:31648661(+) A-I      intronic
chr15:31660970(+) A-I      intronic
chr15:31648704(+) A-I      intronic
chr15:31648603(+) A-I      intronic
chr15:31662715(+) A-I      intronic
chr15:31662842(+) A-I      intronic
chr15:31648495(+) A-I      intronic
chr15:31644051(+) A-I      intronic
chr15:31660964(+) A-I      intronic
chr15:31643960(+) A-I      intronic
chr15:31646653(+) A-I      intronic
chr15:31655754(+) A-I      intronic
chr15:31646823(+) A-I      intronic
chr15:31646687(+) A-I      intronic
chr15:31662702(+) A-I      intronic
chr15:31648499(+) A-I      intronic
chr15:31660850(+) A-I      intronic
chr15:31644095(+) A-I      intronic
chr15:31648697(+) A-I      intronic
chr15:31660795(+) A-I      intronic
chr15:31660949(+) A-I      intronic
chr15:31661015(+) A-I      intronic
chr15:31638678(+) A-I      intronic
chr15:31644054(+) A-I      intronic
chr15:31655898(+) A-I      intronic
chr15:31633035(+) A-I      intronic
chr15:31646723(+) A-I      intronic
chr15:31648705(+) A-I      intronic
chr15:31644170(+) A-I      intronic
chr15:31660892(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KLF13
chr15:31668507(+) A-I intron -    21960545
chr15:31667258(+) T-G intron -    21725310
chr15:31646713(+) A-G intron -    22484847
chr15:31646723(+) A-G intron -    22484847
chr15:31660892(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KLF13
chr15:31619148-31619149(+) m6A 5'UTR       24981863
chr15:31619175-31619176(+) m6A 5'UTR       24209618//24981863
chr15:31619437-31619438(+) m6A CDS       24209618
chr15:31619584-31619585(+) m6A CDS       24209618//24981863
chr15:31619623-31619624(+) m6A CDS       24209618//24981863
chr15:31619694-31619695(+) m6A CDS       24209618
chr15:31619858-31619859(+) m6A CDS//exon       24284625//24209618
chr15:31619982-31619983(+) m6A CDS//exon       24284625//24209618//22575960
chr15:31658409-31658410(+) m6A 5'UTR//intron       24284625
chr15:31664242-31664243(+) m6A 5'UTR//CDS//intron       24284625
chr15:31664430-31664431(+) m6A CDS//intron       24284625//24209618//22575960
chr15:31664584-31664585(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085
chr15:31664608-31664609(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:31664652-31664653(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:31664661-31664662(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:31664679-31664680(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr15:31664739-31664740(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:31664759-31664760(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:31664783-31664784(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:31664850-31664851(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31664861-31664862(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665071-31665072(+) m6A 3'UTR//intron       24284625//24981863
chr15:31665304-31665305(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:31665341-31665342(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665460-31665461(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665543-31665544(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665561-31665562(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665567-31665568(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665581-31665582(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665691-31665692(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665713-31665714(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665722-31665723(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr15:31665748-31665749(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr15:31665935-31665936(+) m6A 3'UTR//intron       24284625//24209618//22575960
chr15:31666035-31666036(+) m6A 3'UTR//intron       24284625//24209618
chr15:31666116-31666117(+) m6A 3'UTR//intron       24284625
chr15:31666186-31666187(+) m6A 3'UTR//intron       24284625
chr15:31666285-31666286(+) m6A 3'UTR//intron       24284625
chr15:31666292-31666293(+) m6A 3'UTR//intron       24284625
chr15:31666351-31666352(+) m6A 3'UTR//intron       24284625//22575960
chr15:31666467-31666468(+) m6A 3'UTR//intron       24284625//24981863//26404942
chr15:31666475-31666476(+) m6A 3'UTR//intron       24284625//24981863//26404942
chr15:31666516-31666517(+) m6A 3'UTR//intron       24284625//24981863//26404942
chr15:31666649-31666650(+) m6A 3'UTR//intron       24284625
chr15:31666999-31667000(+) m6A 3'UTR//intron       -
chr15:31667006-31667007(+) m6A 3'UTR//intron       -
chr15:31667150-31667151(+) Tm 3'UTR//intron       -
chr15:31667927-31667928(+) m6A 3'UTR//intron       24284625
chr15:31667935-31667936(+) m6A 3'UTR//intron       24284625
chr15:31668017-31668018(+) m6A 3'UTR//intron       24284625
chr15:31668169-31668170(+) m6A 3'UTR//intron       24284625//24981863//22575960
chr15:31668211-31668212(+) m6A 3'UTR//intron       24284625//25456834//22575960
chr15:31668222-31668223(+) m6A 3'UTR//intron       24284625//25456834//22575960
chr15:31668283-31668284(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960
chr15:31668328-31668329(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960
chr15:31668366-31668367(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960
chr15:31668395-31668396(+) m6A 3'UTR//intron       24284625//25456834//24981863//22575960
chr15:31668761-31668762(+) m6A 3'UTR//exon//intron       24284625//24981863
chr15:31668815-31668816(+) m6A 3'UTR//intron       24284625//24981863
chr15:31668828-31668829(+) m6A 3'UTR//intron       24284625//24981863
chr15:31668842-31668843(+) m6A 3'UTR//intron       24284625//24981863
chr15:31669030-31669031(+) m6A 3'UTR//intron       24284625//24209618//24981863
chr15:31669088-31669089(+) m6A 3'UTR//intron       24284625//24209618//24981863//26404942
chr15:31669114-31669115(+) m6A 3'UTR//intron       24284625//24981863//26404942
chr15:31669222-31669223(+) m6A 3'UTR//intron       24981863
chr15:31669488-31669489(+) m6A 3'UTR//intron       24284625
chr15:31669788-31669789(+) m6A 3'UTR//exon//intron       24284625
chr15:31669827-31669828(+) m6A 3'UTR//exon//intron       24284625//26404942
chr15:31669947-31669948(+) m6A 3'UTR//exon//intron       24284625
chr15:31695771-31695772(+) m6A exon//intron       -
chr15:31695804-31695805(+) m6A exon//intron       -

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320a-3p
Apoptotic body Human umbilical vein endothelial cells     19996457
Cytoplasm Cardiomyocytes     31837603
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Human cervical cancer cell line (HeLa)     25760330
Exosome Pooled sera     27278097
Exosome Serum     18589210
Exosome Glioblastoma cells     19011622
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Ovarian follicular fluid     22116803
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Human mast cell line (HMC-1)     24009880
Exosome Serum     25135963
Exosome Human esophageal cancer cell line (EC9706)     25184951
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Cerebrospinal fluid     25420022
Exosome Blood|B lymphoblastoid cells|Breast milk|Chronic lymphocytic leukemia cells|Colon tissue|Endothelial cells|Epithelial cells|Kidney tissue|Lymphoma tissue|Mast cells|Seminal fluid|Tongue tissue     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Glioblastoma cells     19011622
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Blood|Breast cell line|Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion HEK-293 cells|HeLa cells     27396686
Mitochondrion HEK-293 cells|HeLa cells     27563705
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleolus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Cardiomyocytes     31837603
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Neural progenitor cells     21363885
KLF13
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Insoluble cytoplasm HCC cell line (HepG2)     -
Nucleus HeLa-S3 cells|K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320a-3p
Interactor2: KLF13

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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