Detail Information

Basic Information:


  VIRBase ID:  

HHID00054046

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320a-3p:           IMMT:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320a-3p IMMT
miRBase
Accession/Entrez ID		 MIMAT0000510 10989
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - HMP//Mic60//MICOS60//MINOS2//P87//P87/89//P89//PIG4//PIG52

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320a-3p
rs1276783280 chr8:22244983    T/C
rs1304651256 chr8:22244976    C/A
rs1335522641 chr8:22244984    C/G
rs1342806696 chr8:22244985    A/T
rs1380599305 chr8:22244977    G/A
rs376090584 chr8:22244982    C/T
rs745462427 chr8:22244996    T/A
rs745462427 chr8:22244996    T/C
rs778232802 chr8:22244988    C/A
rs778232802 chr8:22244988    C/T
rs1029283088 chr8:22244995    T/C
rs1272164828 chr8:22244990    A/G
rs1295910991 chr8:22244991    G/C
rs1311220991 chr8:22244994    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR IMMT
chr2:86381417(-) A-I      intronic
chr2:86381487(-) A-I      intronic
chr2:86397447(-) A-I      intronic
chr2:86384789(-) A-I      intronic
chr2:86371260(-) A-I      3'UTR
chr2:86384973(-) A-I      intronic
chr2:86381507(-) A-I      intronic
chr2:86381521(-) A-I      intronic
chr2:86371275(-) A-I      3'UTR
chr2:86381132(-) A-I      intronic
chr2:86371290(-) A-I      3'UTR
chr2:86371294(-) A-I      3'UTR
chr2:86381407(-) A-I      intronic
chr2:86384968(-) A-I      intronic
chr2:86381498(-) A-I      intronic
chr2:86371281(-) A-I      3'UTR
chr2:86381156(-) A-I      intronic
chr2:86381325(-) A-I      intronic
chr2:86384824(-) A-I      intronic
chr2:86384873(-) A-I      intronic
chr2:86384898(-) A-I      intronic
chr2:86384906(-) A-I      intronic
chr2:86384910(-) A-I      intronic
chr2:86381353(-) A-I      intronic
chr2:86394896(-) A-I      intronic
chr2:86384976(-) A-I      intronic
chr2:86394746(-) A-I      intronic
chr2:86394802(-) A-I      intronic
chr2:86394439(-) A-I      intronic
chr2:86394018(-) A-I      intronic
chr2:86381363(-) A-I      intronic
chr2:86394863(-) A-I      intronic
chr2:86381381(-) A-I      intronic
chr2:86381444(-) A-I      intronic
chr2:86381460(-) A-I      intronic
chr2:86381471(-) A-I      intronic
chr2:86381575(-) A-I      intronic
chr2:86382033(-) A-I      intronic
chr2:86382088(-) A-I      intronic
chr2:86382134(-) A-I      intronic
chr2:86399365(-) A-I      intronic
chr2:86407141(-) A-I      intronic
chr2:86407153(-) A-I      intronic
chr2:86407156(-) A-I      intronic
chr2:86407456(-) A-I      intronic
chr2:86393966(-) A-I      intronic
chr2:86384787(-) A-I      intronic
chr2:86384704(-) A-I      intronic
chr2:86383552(-) A-I      intronic
chr2:86383695(-) A-I      intronic
chr2:86383549(-) A-I      intronic
chr2:86383512(-) A-I      intronic
chr2:86382205(-) A-I      intronic
chr2:86382145(-) A-I      intronic
chr2:86407150(-) A-I      intronic
chr2:86385018(-) A-I      intronic
chr2:86407517(-) A-I      intronic
chr2:86388720(-) A-I      intronic
chr2:86388816(-) A-I      intronic
chr2:86388865(-) A-I      intronic
chr2:86388916(-) A-I      intronic
chr2:86391178(-) A-I      intronic
chr2:86391248(-) A-I      intronic
chr2:86391249(-) A-I      intronic
chr2:86391286(-) A-I      intronic
chr2:86391292(-) A-I      intronic
chr2:86391337(-) A-I      intronic
chr2:86391357(-) A-I      intronic
chr2:86391362(-) A-I      intronic
chr2:86384993(-) A-I      intronic
chr2:86391393(-) A-I      intronic
chr2:86391447(-) A-I      intronic
chr2:86388729(-) A-I      intronic
chr2:86394723(-) A-I      intronic
chr2:86416531(-) A-I      intronic
chr2:86393978(-) A-I      intronic
chr2:86416506(-) A-I      intronic
chr2:86416473(-) A-I      intronic
chr2:86416420(-) A-I      intronic
chr2:86416418(-) A-I      intronic
chr2:86407461(-) A-I      intronic
chr2:86384825(-) A-I      intronic
chr2:86378125(-) A-I      intronic
chr2:86378137(-) A-I      intronic
chr2:86378204(-) A-I      intronic
chr2:86378207(-) A-I      intronic
chr2:86381233(-) A-I      intronic
chr2:86381254(-) A-I      intronic
chr2:86407418(-) A-I      intronic
chr2:86384743(-) A-I      intronic
chr2:86384665(-) A-I      intronic
chr2:86393209(-) A-I      intronic
chr2:86378155(-) A-I      intronic
chr2:86385001(-) A-I      intronic
chr2:86384905(-) A-I      intronic
chr2:86399194(-) A-I      intronic
chr2:86382114(-) A-I      intronic
chr2:86384767(-) A-I      intronic
chr2:86382258(-) A-I      intronic
chr2:86384979(-) A-I      intronic
chr2:86390911(-) A-I      intronic
chr2:86384992(-) A-I      intronic
chr2:86381142(-) A-I      intronic
chr2:86384687(-) A-I      intronic
chr2:86384991(-) A-I      intronic
chr2:86381428(-) A-I      intronic
chr2:86383605(-) A-I      intronic
chr2:86381181(-) A-I      intronic
chr2:86397420(-) A-I      intronic
chr2:86388704(-) A-I      intronic
chr2:86382107(-) A-I      intronic
chr2:86382181(-) A-I      intronic
chr2:86384737(-) A-I      intronic
chr2:86397293(-) A-I      intronic
chr2:86378177(-) A-I      intronic
chr2:86382174(-) A-I      intronic
chr2:86382180(-) A-I      intronic
chr2:86384799(-) A-I      intronic
chr2:86385019(-) A-I      intronic
chr2:86384664(-) A-I      intronic
chr2:86381434(-) A-I      intronic
chr2:86381107(-) A-I      intronic
chr2:86384652(-) A-I      intronic
chr2:86382179(-) A-I      intronic
chr2:86384746(-) A-I      intronic
chr2:86382040(-) A-I      intronic
chr2:86391728(-) A-I      intronic
chr2:86381567(-) A-I      intronic
chr2:86394756(-) A-I      intronic
chr2:86386933(-) A-I      intronic
chr2:86384663(-) A-I      intronic
chr2:86376838(-) A-I      intronic
chr2:86399613(-) A-I      intronic
chr2:86382058(-) A-I      intronic
chr2:86381078(-) A-I      intronic
chr2:86378268(-) A-I      intronic
chr2:86376940(-) A-I      intronic
chr2:86399624(-) A-I      intronic
chr2:86394800(-) A-I      intronic
chr2:86382281(-) A-I      intronic
chr2:86394072(-) A-I      intronic
chr2:86384872(-) A-I      intronic
chr2:86376916(-) A-I      intronic
chr2:86399143(-) A-I      intronic
chr2:86399689(-) A-I      intronic
chr2:86383493(-) A-I      intronic
chr2:86399688(-) A-I      intronic
chr2:86390924(-) A-I      intronic
chr2:86394700(-) A-I      intronic
chr2:86394845(-) A-I      intronic
chr2:86383456(-) A-I      intronic
chr2:86381566(-) A-I      intronic
chr2:86381118(-) A-I      intronic
chr2:86378314(-) A-I      intronic
chr2:86382259(-) A-I      intronic
chr2:86399372(-) A-I      intronic
chr2:86378178(-) A-I      intronic
chr2:86394138(-) A-I      intronic
chr2:86388449(-) A-I      intronic
chr2:86394493(-) A-I      intronic
chr2:86399543(-) A-I      intronic
chr2:86386955(-) A-I      intronic
chr2:86373720(-) A-I      intronic
chr2:86394808(-) A-I      intronic
chr2:86378107(-) A-I      intronic
chr2:86382204(-) A-I      intronic
chr2:86383670(-) A-I      intronic
chr2:86382038(-) A-I      intronic
chr2:86385032(-) A-I      intronic
chr2:86390987(-) A-I      intronic
chr2:86381361(-) A-I      intronic
chr2:86376962(-) A-I      intronic
chr2:86376783(-) A-I      intronic
chr2:86390884(-) A-I      intronic
chr2:86382275(-) A-I      intronic
chr2:86399632(-) A-I      intronic
chr2:86390276(-) A-I      intronic
chr2:86400447(-) A-I      intronic
chr2:86376885(-) A-I      intronic
chr2:86406037(-) A-I      intronic
chr2:86394036(-) A-I      intronic
chr2:86382218(-) A-I      intronic
chr2:86394772(-) A-I      intronic
chr2:86381150(-) A-I      intronic
chr2:86382096(-) A-I      intronic
chr2:86381163(-) A-I      intronic
chr2:86394785(-) A-I      intronic
chr2:86374048(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED IMMT
chr2:86382114(-) A-I intron -    22327324
chr2:86382179(-) A-I intron -    22327324
chr2:86372340(-) T-C intron -    22484847
chr2:86372408(-) T-C intron -    22484847
chr2:86372416(-) T-C intron -    22484847
chr2:86372511(-) T-C intron -    22484847
chr2:86373531(-) T-C intron -    22484847
chr2:86373587(-) T-C intron -    22484847
chr2:86373594(-) T-C intron -    22484847
chr2:86373638(-) G-C intron -    22484847
chr2:86374020(-) T-C intron -    22484847
chr2:86375685(-) T-C intron -    22484847
chr2:86376853(-) A-G intron -    22484847
chr2:86376885(-) A-G intron -    22484847
chr2:86376912(-) T-C intron -    22484847
chr2:86376940(-) A-G intron -    22484847
chr2:86376945(-) T-C intron -    22484847
chr2:86376948(-) T-C intron -    22484847
chr2:86376962(-) A-G intron -    22484847
chr2:86377022(-) C-T intron -    22484847
chr2:86378101(-) T-C intron -    22484847
chr2:86378109(-) T-C intron -    22484847
chr2:86378168(-) A-G intron -    22484847
chr2:86378177(-) A-G intron -    22484847
chr2:86378178(-) A-G intron -    22484847
chr2:86379516(-) T-C intron -    22484847
chr2:86381162(-) A-G intron -    22484847
chr2:86381434(-) A-G intron -    22484847
chr2:86381566(-) A-G intron -    22484847
chr2:86381567(-) A-G intron -    22484847
chr2:86382040(-) A-G intron -    22484847
chr2:86382058(-) A-G intron -    22484847
chr2:86382064(-) A-G intron -    22484847
chr2:86382096(-) A-G intron -    22484847
chr2:86382114(-) A-G intron -    22484847
chr2:86382150(-) A-G intron -    22484847
chr2:86382179(-) A-G intron -    22484847
chr2:86382187(-) A-G intron -    22484847
chr2:86382258(-) A-G intron -    22484847
chr2:86382259(-) A-G intron -    22484847
chr2:86382261(-) A-G intron -    22484847
chr2:86382275(-) A-G intron -    22484847
chr2:86382281(-) A-G intron -    22484847
chr2:86383493(-) A-G intron -    22484847
chr2:86383670(-) A-G intron -    22484847
chr2:86384664(-) A-G intron -    22484847
chr2:86384679(-) A-G intron -    22484847
chr2:86384691(-) A-G intron -    22484847
chr2:86384737(-) A-G intron -    22484847
chr2:86384799(-) A-G intron -    22484847
chr2:86384872(-) A-G intron -    22484847
chr2:86385001(-) A-G intron -    22484847
chr2:86385019(-) A-G intron -    22484847
chr2:86386216(-) A-T intron -    22484847
chr2:86386333(-) A-G intron -    22484847
chr2:86386347(-) A-G intron -    22484847
chr2:86386915(-) A-G intron -    22484847
chr2:86388909(-) A-G intron -    22484847
chr2:86390884(-) A-G intron -    22484847
chr2:86390911(-) A-G intron -    22484847
chr2:86390987(-) A-G intron -    22484847
chr2:86391041(-) A-G intron -    22484847
chr2:86391589(-) T-C intron -    22484847
chr2:86391728(-) A-G intron -    22484847
chr2:86391751(-) A-G intron -    22484847
chr2:86393960(-) A-G intron -    22484847
chr2:86394138(-) A-G intron -    22484847
chr2:86394756(-) A-G intron -    22484847
chr2:86394772(-) A-G intron -    22484847
chr2:86394877(-) A-G intron -    22484847
chr2:86407500(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase IMMT
chr2:86371413-86371414(-) m6A CDS       -
chr2:86371462-86371463(-) m6A CDS       24981863//22575960
chr2:86371499-86371500(-) m6A CDS       24981863//22575960
chr2:86371610-86371611(-) m6A CDS       24981863
chr2:86371716-86371717(-) m6A CDS       24981863
chr2:86371747-86371748(-) m6A CDS       24981863
chr2:86374916-86374917(-) m6A CDS//intron       24981863//26404942//27773535//22575960
chr2:86378421-86378422(-) Am CDS//intron       -
chr2:86378426-86378427(-) m6A CDS//intron       24981863//27773535//22575960
chr2:86378431-86378432(-) m6A CDS//intron       24981863//27773535//22575960
chr2:86378458-86378459(-) m6A CDS//intron       24981863//27773535//22575960
chr2:86378512-86378513(-) m6A CDS//intron       24981863//26404942//27773535
chr2:86378557-86378558(-) m6A CDS//intron       27773535
chr2:86378573-86378574(-) m6A CDS//intron       27773535
chr2:86378615-86378616(-) m6A CDS//intron       27773535
chr2:86380687-86380688(-) m6A CDS//intron       27773535
chr2:86386700-86386701(-) m6A 3'UTR//CDS//exon//intron       24981863
chr2:86389083-86389084(-) m6A exon//intron       24981863//28052920
chr2:86393640-86393641(-) m6A 3'UTR//CDS//exon//intron       24981863
chr2:86406640-86406641(-) Y 5'UTR//CDS//exon       26075521
chr2:86422100-86422101(-) m6A 5'UTR//intron       24284625//24981863
chr2:86422783-86422784(-) m6A 5'UTR       25456834//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320a-3p
Apoptotic body Human umbilical vein endothelial cells     19996457
Cytoplasm Cardiomyocytes     31837603
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Human cervical cancer cell line (HeLa)     25760330
Exosome Pooled sera     27278097
Exosome Serum     18589210
Exosome Glioblastoma cells     19011622
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Ovarian follicular fluid     22116803
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Human mast cell line (HMC-1)     24009880
Exosome Serum     25135963
Exosome Human esophageal cancer cell line (EC9706)     25184951
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Cerebrospinal fluid     25420022
Exosome Blood|B lymphoblastoid cells|Breast milk|Chronic lymphocytic leukemia cells|Colon tissue|Endothelial cells|Epithelial cells|Kidney tissue|Lymphoma tissue|Mast cells|Seminal fluid|Tongue tissue     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Glioblastoma cells     19011622
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Blood|Breast cell line|Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion HEK-293 cells|HeLa cells     27396686
Mitochondrion HEK-293 cells|HeLa cells     27563705
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleolus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Cardiomyocytes     31837603
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Neural progenitor cells     21363885
IMMT
Chromatin K562 cells     -
Cytosol K562 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320a-3p
Interactor2: IMMT

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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