Detail Information

Basic Information:


  VIRBase ID:  

HHID00054030

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-320a-3p:           KLF7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-320a-3p KLF7
miRBase
Accession/Entrez ID		 MIMAT0000510 8609
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - UKLF

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-320a-3p
rs1276783280 chr8:22244983    T/C
rs1304651256 chr8:22244976    C/A
rs1335522641 chr8:22244984    C/G
rs1342806696 chr8:22244985    A/T
rs1380599305 chr8:22244977    G/A
rs376090584 chr8:22244982    C/T
rs745462427 chr8:22244996    T/A
rs745462427 chr8:22244996    T/C
rs778232802 chr8:22244988    C/A
rs778232802 chr8:22244988    C/T
rs1029283088 chr8:22244995    T/C
rs1272164828 chr8:22244990    A/G
rs1295910991 chr8:22244991    G/C
rs1311220991 chr8:22244994    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR KLF7
chr2:207964706(-) A-I      intronic
chr2:207964705(-) A-I      intronic
chr2:207970304(-) A-I      intronic
chr2:207964754(-) A-I      intronic
chr2:207969993(-) A-I      intronic
chr2:207970259(-) A-I      intronic
chr2:207970326(-) A-I      intronic
chr2:207971739(-) A-I      intronic
chr2:207971640(-) A-I      intronic
chr2:207971639(-) A-I      intronic
chr2:207970239(-) A-I      intronic
chr2:207970204(-) A-I      intronic
chr2:207970203(-) A-I      intronic
chr2:207970185(-) A-I      intronic
chr2:207964710(-) A-I      intronic
chr2:207970233(-) A-I      intronic
chr2:207970193(-) A-I      intronic
chr2:207964609(-) A-I      intronic
chr2:207964830(-) A-I      intronic
chr2:207963503(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED KLF7
chr2:207970141(-) A-G intron -    22484847
chr2:207970142(-) A-G intron -    22484847
chr2:207970202(-) A-G intron -    22484847
chr2:207971678(-) A-G intron -    22484847
chr2:207971734(-) A-G intron -    22484847
chr2:207964830(-) A-G intron -    22484847
chr2:207964868(-) T-C intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase KLF7
chr2:207940233-207940234(-) m6A 3'UTR       27773535
chr2:207940342-207940343(-) m6A 3'UTR       24981863//27773535
chr2:207941481-207941482(-) m6A 3'UTR       24981863
chr2:207941517-207941518(-) m6A 3'UTR       24981863
chr2:207942687-207942688(-) m6A 3'UTR       24981863
chr2:207942696-207942697(-) m6A 3'UTR       24981863
chr2:207942705-207942706(-) m6A 3'UTR       24981863
chr2:207942720-207942721(-) m6A 3'UTR       24981863
chr2:207942734-207942735(-) m6A 3'UTR       24981863
chr2:207942753-207942754(-) m6A 3'UTR       24981863
chr2:207943756-207943757(-) m6A 3'UTR       24981863//27773535
chr2:207943789-207943790(-) m6A 3'UTR       24981863//27773535
chr2:207943801-207943802(-) m6A 3'UTR       24981863//27773535
chr2:207943807-207943808(-) m6A 3'UTR       24981863//27773535
chr2:207943813-207943814(-) m6A 3'UTR       24981863//27773535
chr2:207943823-207943824(-) m6A 3'UTR       24981863//27773535
chr2:207943889-207943890(-) m6A 3'UTR       24981863//27773535
chr2:207943921-207943922(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207943944-207943945(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207944019-207944020(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207944025-207944026(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207944054-207944055(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207944182-207944183(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207944195-207944196(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207944209-207944210(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207944237-207944238(-) m6A 3'UTR       24284625//27773535
chr2:207944279-207944280(-) m6A 3'UTR       24284625
chr2:207944443-207944444(-) m6A 3'UTR       27773535
chr2:207944888-207944889(-) m6A 3'UTR       27773535
chr2:207944938-207944939(-) m6A 3'UTR       27773535
chr2:207944949-207944950(-) m6A 3'UTR       27773535
chr2:207944954-207944955(-) m6A 3'UTR       27773535
chr2:207945003-207945004(-) m6A 3'UTR       27773535
chr2:207945135-207945136(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207945211-207945212(-) m6A 3'UTR       24284625//24981863//27773535
chr2:207945254-207945255(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr2:207945327-207945328(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr2:207945340-207945341(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr2:207945424-207945425(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr2:207945642-207945643(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:207945656-207945657(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:207945665-207945666(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:207945767-207945768(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:207945815-207945816(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr2:207945851-207945852(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr2:207945864-207945865(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22575960//22608085
chr2:207945932-207945933(-) m6A 3'UTR//exon       24284625//24209618//24981863//27773535//22608085
chr2:207945945-207945946(-) m6A 3'UTR//CDS//exon       24284625//24209618//24981863//27773535//22608085
chr2:207953222-207953223(-) m6A CDS//exon       24284625//24209618//24981863//27773535
chr2:207988506-207988507(-) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960
chr2:207988589-207988590(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988639-207988640(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988735-207988736(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988770-207988771(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988779-207988780(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988871-207988872(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988908-207988909(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988925-207988926(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988943-207988944(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207988997-207988998(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207989054-207989055(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207989060-207989061(-) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207989073-207989074(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:207989127-207989128(-) m6A 3'UTR//CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:208013720-208013721(-) m6A 3'UTR//intron       27773535
chr2:208013732-208013733(-) m6A 3'UTR//intron       27773535
chr2:208013799-208013800(-) m6A 3'UTR//intron       24209618
chr2:208013831-208013832(-) m6A 3'UTR//intron       24209618
chr2:208013843-208013844(-) m6A 3'UTR//intron       24209618//24981863
chr2:208013892-208013893(-) m6A CDS//intron       24209618//24981863
chr2:208030201-208030202(-) m6A CDS//intron       24284625//24209618//27773535//22608085
chr2:208030354-208030355(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr2:208030366-208030367(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr2:208030410-208030411(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr2:208030415-208030416(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr2:208030420-208030421(-) m6A 5'UTR//intron       24284625//24209618//24981863//27773535//27371828//22608085
chr2:208030670-208030671(-) m6A 5'UTR//intron       24981863//27773535
chr2:208030787-208030788(-) m6A 5'UTR//intron       25456834//24981863
chr2:208030794-208030795(-) m6A 5'UTR//intron       25456834//24981863
chr2:208030859-208030860(-) m6A 5'UTR//intron       25456834//24981863
chr2:208031728-208031729(-) m6A 5'UTR//intron       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-320a-3p
Apoptotic body Human umbilical vein endothelial cells     19996457
Cytoplasm Cardiomyocytes     31837603
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Exosome Human cervical cancer cell line (HeLa)     25760330
Exosome Pooled sera     27278097
Exosome Serum     18589210
Exosome Glioblastoma cells     19011622
Exosome Breast cancer cell line (MCF-7)     20976003
Exosome Ovarian follicular fluid     22116803
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Human mast cell line (HMC-1)     24009880
Exosome Serum     25135963
Exosome Human esophageal cancer cell line (EC9706)     25184951
Exosome Colon cancer cell line (LIM1863)     25330373
Exosome Cerebrospinal fluid     25420022
Exosome Blood|B lymphoblastoid cells|Breast milk|Chronic lymphocytic leukemia cells|Colon tissue|Endothelial cells|Epithelial cells|Kidney tissue|Lymphoma tissue|Mast cells|Seminal fluid|Tongue tissue     -
Extracellular vesicle HEK-293T cells     22849433
Microvesicle Glioblastoma cells     19011622
Microvesicle Plasma     23077538
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Blood|Breast cell line|Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion HEK-293 cells|HeLa cells     27396686
Mitochondrion HEK-293 cells|HeLa cells     27563705
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
Nucleolus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059
Nucleus Cardiomyocytes     31837603
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Neural progenitor cells     21363885
KLF7
Cytosol HeLa-S3 cells     -
Endoplasmic reticulum Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-320a-3p
Interactor2: KLF7

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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