Detail Information

Basic Information:


  VIRBase ID:  

HHID00053478

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-5p:           ASF1B:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-190a-5p ASF1B
miRBase
Accession/Entrez ID		 MIMAT0000458 55723
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CIA-II

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-190a-5p
rs1018706777 chr15:62823984    A/G
rs1369926402 chr15:62823991    G/A
rs1555521311 chr15:62823990    G/C
rs755866868 chr15:62823986    A/G
rs766742872 chr15:62823990    GGTT/G
rs777464613 chr15:62823987    T/G
rs1228899174 chr15:62823974    T/A
rs1281303771 chr15:62823976    T/C
rs1350000299 chr15:62823972    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ASF1B
chr19:14240407(-) A-I      intronic
chr19:14245912(-) A-I      intronic
chr19:14245924(-) A-I      intronic
chr19:14242325(-) A-I      intronic
chr19:14242309(-) A-I      intronic
chr19:14242294(-) A-I      intronic
chr19:14242293(-) A-I      intronic
chr19:14242292(-) A-I      intronic
chr19:14242272(-) A-I      intronic
chr19:14242257(-) A-I      intronic
chr19:14242324(-) A-I      intronic
chr19:14242299(-) A-I      intronic
chr19:14243414(-) A-I      intronic
chr19:14242533(-) A-I      intronic
chr19:14242523(-) A-I      intronic
chr19:14245959(-) A-I      intronic
chr19:14242499(-) A-I      intronic
chr19:14245792(-) A-I      intronic
chr19:14242478(-) A-I      intronic
chr19:14245791(-) A-I      intronic
chr19:14244380(-) A-I      intronic
chr19:14243739(-) A-I      intronic
chr19:14243506(-) A-I      intronic
chr19:14242135(-) A-I      intronic
chr19:14241866(-) A-I      intronic
chr19:14241251(-) A-I      intronic
chr19:14241246(-) A-I      intronic
chr19:14241140(-) A-I      intronic
chr19:14240267(-) A-I      intronic
chr19:14241074(-) A-I      intronic
chr19:14240971(-) A-I      intronic
chr19:14238551(-) A-I      intronic
chr19:14237579(-) A-I      intronic
chr19:14237573(-) A-I      intronic
chr19:14237408(-) A-I      intronic
chr19:14240378(-) A-I      intronic
chr19:14240238(-) A-I      intronic
chr19:14241883(-) A-I      intronic
chr19:14241869(-) A-I      intronic
chr19:14242475(-) A-I      intronic
chr19:14243530(-) A-I      intronic
chr19:14240297(-) A-I      intronic
chr19:14239966(-) A-I      intronic
chr19:14240596(-) A-I      intronic
chr19:14240272(-) A-I      intronic
chr19:14237623(-) A-I      intronic
chr19:14242332(-) A-I      intronic
chr19:14240765(-) A-I      intronic
chr19:14240056(-) A-I      intronic
chr19:14243004(-) A-I      intronic
chr19:14243457(-) A-I      intronic
chr19:14242265(-) A-I      intronic
chr19:14242367(-) A-I      intronic
chr19:14243798(-) A-I      intronic
chr19:14244397(-) A-I      intronic
chr19:14241146(-) A-I      intronic
chr19:14240032(-) A-I      intronic
chr19:14241009(-) A-I      intronic
chr19:14245954(-) A-I      intronic
chr19:14239389(-) A-I      intronic
chr19:14240647(-) A-I      intronic
chr19:14244404(-) A-I      intronic
chr19:14234783(-) A-I      intronic
chr19:14241766(-) A-I      intronic
chr19:14241260(-) A-I      intronic
chr19:14243573(-) A-I      intronic
chr19:14242203(-) A-I      intronic
chr19:14243808(-) A-I      intronic
chr19:14243547(-) A-I      intronic
chr19:14240803(-) A-I      intronic
chr19:14239403(-) A-I      intronic
chr19:14243464(-) A-I      intronic
chr19:14239384(-) A-I      intronic
chr19:14239339(-) A-I      intronic
chr19:14237831(-) A-I      intronic
chr19:14235170(-) A-I      intronic
chr19:14242222(-) A-I      intronic
chr19:14243788(-) A-I      intronic
chr19:14238613(-) A-I      intronic
chr19:14240773(-) A-I      intronic
chr19:14240334(-) A-I      intronic
chr19:14244358(-) A-I      intronic
chr19:14242964(-) A-I      intronic
chr19:14245914(-) A-I      intronic
chr19:14238722(-) A-I      intronic
chr19:14238589(-) A-I      intronic
chr19:14243023(-) A-I      intronic
chr19:14234778(-) A-I      intronic
chr19:14234782(-) A-I      intronic
chr19:14240608(-) A-I      intronic
chr19:14243397(-) A-I      intronic
chr19:14243505(-) A-I      intronic
chr19:14238476(-) A-I      intronic
chr19:14245848(-) A-I      intronic
chr19:14240033(-) A-I      intronic
chr19:14241854(-) A-I      intronic
chr19:14240624(-) A-I      intronic
chr19:14237622(-) A-I      intronic
chr19:14245953(-) A-I      intronic
chr19:14239990(-) A-I      intronic
chr19:14240828(-) A-I      intronic
chr19:14240368(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ASF1B
chr19:14234776(-) A-G intron -    22484847
chr19:14234778(-) A-G intron -    22484847
chr19:14234782(-) A-G intron -    22484847
chr19:14234783(-) A-G intron -    22484847
chr19:14239384(-) A-G intron -    22484847
chr19:14239389(-) A-G intron -    22484847
chr19:14240032(-) A-G intron -    22484847
chr19:14240334(-) A-G intron -    22484847
chr19:14241009(-) A-G intron -    22484847
chr19:14242380(-) A-G intron -    22484847
chr19:14243397(-) A-G intron -    22484847
chr19:14245953(-) A-G intron -    22484847
chr19:14245954(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ASF1B
chr19:14231133-14231134(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr19:14231152-14231153(-) m6A 3'UTR       24284625//25456834//24981863//27371828
chr19:14231189-14231190(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27371828//27773536//22608085
chr19:14231261-14231262(-) m6A 3'UTR       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:14231280-14231281(-) m6A 3'UTR//CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:14231289-14231290(-) m6A 3'UTR//CDS       24284625//25456834//24981863//28052920//27773535//27371828//27773536//22575960//22608085
chr19:14231379-14231380(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr19:14231386-14231387(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr19:14231406-14231407(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr19:14231418-14231419(-) m6A 3'UTR//CDS       24284625//25456834//24981863//27773535//27371828//22608085
chr19:14231451-14231452(-) m6A 3'UTR//CDS       24284625//24981863//27773535//27371828
chr19:14231466-14231467(-) m6A 3'UTR//CDS       24284625//24981863//27773535
chr19:14232127-14232128(-) m6A 3'UTR//intron       24284625//27773535
chr19:14232192-14232193(-) m6A 3'UTR//intron       27773535
chr19:14232436-14232437(-) m6A 3'UTR//CDS//intron       24284625
chr19:14232486-14232487(-) m6A CDS//intron       24284625
chr19:14236951-14236952(-) m6A CDS//intron       24284625//27773536
chr19:14236985-14236986(-) m6A CDS//intron       24284625//27371828//27773536
chr19:14247227-14247228(-) m6A CDS       24284625//27371828//27773536
chr19:14247332-14247333(-) m6A 5'UTR       24284625//25456834//24981863//27371828//27773536//22575960
chr19:14247365-14247366(-) m6A 5'UTR       25456834//24981863//27371828//27773536//22575960
chr19:14247409-14247410(-) m6A 5'UTR       25456834//24981863//27371828//27773536
chr19:14247497-14247498(-) m6A 5'UTR       25456834//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-190a-5p
Exosome Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells|Urine     -
ASF1B
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Membrane HCC cell line (HepG2)     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-190a-5p
Interactor2: ASF1B

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

Starting a new search, please wait ...