Detail Information

Basic Information:


  VIRBase ID:  

HHID00053464

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-5p:           ZNF275:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-190a-5p ZNF275
miRBase
Accession/Entrez ID		 MIMAT0000458 10838
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-190a-5p
rs1018706777 chr15:62823984    A/G
rs1369926402 chr15:62823991    G/A
rs1555521311 chr15:62823990    G/C
rs755866868 chr15:62823986    A/G
rs766742872 chr15:62823990    GGTT/G
rs777464613 chr15:62823987    T/G
rs1228899174 chr15:62823974    T/A
rs1281303771 chr15:62823976    T/C
rs1350000299 chr15:62823972    G/A

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ZNF275
chrX:152611023-152611024(+) m6A 5'UTR//CDS       24284625
chrX:152611043-152611044(+) m6A 5'UTR//CDS       24284625
chrX:152612382-152612383(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chrX:152612393-152612394(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chrX:152612436-152612437(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152612465-152612466(+) m6A CDS       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152612829-152612830(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chrX:152613261-152613262(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152613267-152613268(+) m6A 3'UTR//CDS       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152613455-152613456(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152613501-152613502(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152613545-152613546(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152613698-152613699(+) m6A 3'UTR       24981863//22608085
chrX:152613767-152613768(+) m6A 3'UTR       25456834//24981863
chrX:152613887-152613888(+) m6A 3'UTR       24981863
chrX:152614076-152614077(+) m6A 3'UTR       22608085
chrX:152614087-152614088(+) m6A 3'UTR       22608085
chrX:152614181-152614182(+) m6A 3'UTR       -
chrX:152614195-152614196(+) m6A 3'UTR       -
chrX:152614386-152614387(+) m6A 3'UTR       24981863//22608085
chrX:152614422-152614423(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chrX:152614448-152614449(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chrX:152614535-152614536(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152614632-152614633(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152614675-152614676(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chrX:152614703-152614704(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chrX:152614804-152614805(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chrX:152614815-152614816(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chrX:152615154-152615155(+) m6A 3'UTR       24284625//25456834//24981863//22608085
chrX:152615258-152615259(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152615345-152615346(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615370-152615371(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615424-152615425(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615526-152615527(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615538-152615539(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615548-152615549(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615558-152615559(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615590-152615591(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chrX:152615716-152615717(+) m6A 3'UTR       24284625//22608085
chrX:152615838-152615839(+) m6A 3'UTR       24284625
chrX:152615925-152615926(+) m6A 3'UTR       24284625
chrX:152615948-152615949(+) m6A 3'UTR       24284625
chrX:152617294-152617295(+) m6A 3'UTR       24284625//24209618//22608085
chrX:152617394-152617395(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152617399-152617400(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152617449-152617450(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152617458-152617459(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152617465-152617466(+) m6A 3'UTR       24284625//24209618//25456834//24981863//22608085
chrX:152617497-152617498(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chrX:152617505-152617506(+) m6A 3'UTR//exon       24284625//24209618//25456834//24981863//22608085
chrX:152617657-152617658(+) m6A 3'UTR//intron       24284625//24209618//25456834//24981863//22608085
chrX:152617754-152617755(+) m6A 3'UTR//intron       24284625//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-190a-5p
Exosome Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells|Urine     -
ZNF275
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Ribosome Colon cancer cells     24393600

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-190a-5p
Interactor2: ZNF275

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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