Detail Information

Basic Information:


  VIRBase ID:  

HHID00053450

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-190a-5p:           OGDH:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-190a-5p OGDH
miRBase
Accession/Entrez ID
MIMAT0000458 4967
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - AKGDH//E1k//KGD1//OGDC//OGDH2

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-190a-5p
rs1018706777 chr15:62823984    A/G
rs1369926402 chr15:62823991    G/A
rs1555521311 chr15:62823990    G/C
rs755866868 chr15:62823986    A/G
rs766742872 chr15:62823990    GGTT/G
rs777464613 chr15:62823987    T/G
rs1228899174 chr15:62823974    T/A
rs1281303771 chr15:62823976    T/C
rs1350000299 chr15:62823972    G/A

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR OGDH
chr7:44664904(+) A-I      intronic
chr7:44664853(+) A-I      intronic
chr7:44661290(+) A-I      intronic
chr7:44661289(+) A-I      intronic
chr7:44661285(+) A-I      intronic
chr7:44661270(+) A-I      intronic
chr7:44661240(+) A-I      intronic
chr7:44654720(+) A-I      intronic
chr7:44654559(+) A-I      intronic
chr7:44654547(+) A-I      intronic
chr7:44654530(+) A-I      intronic
chr7:44652758(+) A-I      intronic
chr7:44652749(+) A-I      intronic
chr7:44652737(+) A-I      intronic
chr7:44648248(+) A-I      intronic
chr7:44648240(+) A-I      intronic
chr7:44648159(+) A-I      intronic
chr7:44648112(+) A-I      intronic
chr7:44648111(+) A-I      intronic
chr7:44647967(+) A-I      intronic
chr7:44647841(+) A-I      intronic
chr7:44647839(+) A-I      intronic
chr7:44647796(+) A-I      intronic
chr7:44680592(+) A-I      intronic
chr7:44680632(+) A-I      intronic
chr7:44680638(+) A-I      intronic
chr7:44698538(+) A-I      intronic
chr7:44698552(+) A-I      intronic
chr7:44698560(+) A-I      intronic
chr7:44698578(+) A-I      intronic
chr7:44700416(+) A-I      intronic
chr7:44700442(+) A-I      intronic
chr7:44706586(+) A-I      intronic
chr7:44706602(+) A-I      intronic
chr7:44706608(+) A-I      intronic
chr7:44706610(+) A-I      intronic
chr7:44706620(+) A-I      intronic
chr7:44734824(+) A-I      intronic
chr7:44743120(+) A-I      intronic
chr7:44743123(+) A-I      intronic
chr7:44743161(+) A-I      intronic
chr7:44743163(+) A-I      intronic
chr7:44743169(+) A-I      intronic
chr7:44745622(+) A-I      intronic
chr7:44745683(+) A-I      intronic
chr7:44745692(+) A-I      intronic
chr7:44683684(+) A-I      intronic
chr7:44683697(+) A-I      intronic
chr7:44691261(+) A-I      intronic
chr7:44691279(+) A-I      intronic
chr7:44691290(+) A-I      intronic
chr7:44691300(+) A-I      intronic
chr7:44692779(+) A-I      intronic
chr7:44692792(+) A-I      intronic
chr7:44700341(+) A-I      intronic
chr7:44703191(+) A-I      intronic
chr7:44703192(+) A-I      intronic
chr7:44703210(+) A-I      intronic
chr7:44703226(+) A-I      intronic
chr7:44703293(+) A-I      intronic
chr7:44665429(+) A-I      intronic
chr7:44703454(+) A-I      intronic
chr7:44706658(+) A-I      intronic
chr7:44706664(+) A-I      intronic
chr7:44707807(+) A-I      intronic
chr7:44708863(+) A-I      intronic
chr7:44708960(+) A-I      intronic
chr7:44710376(+) A-I      intronic
chr7:44710483(+) A-I      intronic
chr7:44710489(+) A-I      intronic
chr7:44711466(+) A-I      intronic
chr7:44711481(+) A-I      intronic
chr7:44712278(+) A-I      intronic
chr7:44712378(+) A-I      intronic
chr7:44712425(+) A-I      intronic
chr7:44712444(+) A-I      intronic
chr7:44712492(+) A-I      intronic
chr7:44712763(+) A-I      intronic
chr7:44712783(+) A-I      intronic
chr7:44712843(+) A-I      intronic
chr7:44721813(+) A-I      intronic
chr7:44722082(+) A-I      intronic
chr7:44722174(+) A-I      intronic
chr7:44722407(+) A-I      intronic
chr7:44722637(+) A-I      intronic
chr7:44724463(+) A-I      intronic
chr7:44724512(+) A-I      intronic
chr7:44668137(+) A-I      intronic
chr7:44724532(+) A-I      intronic
chr7:44724552(+) A-I      intronic
chr7:44724570(+) A-I      intronic
chr7:44727033(+) A-I      intronic
chr7:44727037(+) A-I      intronic
chr7:44727187(+) A-I      intronic
chr7:44650413(+) A-I      intronic
chr7:44727274(+) A-I      intronic
chr7:44709014(+) A-I      intronic
chr7:44743433(+) A-I      intronic
chr7:44744532(+) A-I      intronic
chr7:44727768(+) A-I      intronic
chr7:44727789(+) A-I      intronic
chr7:44727792(+) A-I      intronic
chr7:44727805(+) A-I      intronic
chr7:44727808(+) A-I      intronic
chr7:44727823(+) A-I      intronic
chr7:44728074(+) A-I      intronic
chr7:44728080(+) A-I      intronic
chr7:44728085(+) A-I      intronic
chr7:44728110(+) A-I      intronic
chr7:44728123(+) A-I      intronic
chr7:44728191(+) A-I      intronic
chr7:44728195(+) A-I      intronic
chr7:44728196(+) A-I      intronic
chr7:44728205(+) A-I      intronic
chr7:44728211(+) A-I      intronic
chr7:44728214(+) A-I      intronic
chr7:44728237(+) A-I      intronic
chr7:44728908(+) A-I      intronic
chr7:44729038(+) A-I      intronic
chr7:44729072(+) A-I      intronic
chr7:44730940(+) A-I      intronic
chr7:44731086(+) A-I      intronic
chr7:44683578(+) A-I      intronic
chr7:44732483(+) A-I      intronic
chr7:44732690(+) A-I      intronic
chr7:44734716(+) A-I      intronic
chr7:44734759(+) A-I      intronic
chr7:44735097(+) A-I      intronic
chr7:44735181(+) A-I      intronic
chr7:44741368(+) A-I      intronic
chr7:44741378(+) A-I      intronic
chr7:44741387(+) A-I      intronic
chr7:44741495(+) A-I      intronic
chr7:44741590(+) A-I      intronic
chr7:44741591(+) A-I      intronic
chr7:44741615(+) A-I      intronic
chr7:44742304(+) A-I      intronic
chr7:44742377(+) A-I      intronic
chr7:44742442(+) A-I      intronic
chr7:44742964(+) A-I      intronic
chr7:44743064(+) A-I      intronic
chr7:44743086(+) A-I      intronic
chr7:44743090(+) A-I      intronic
chr7:44743113(+) A-I      intronic
chr7:44743133(+) A-I      intronic
chr7:44743199(+) A-I      intronic
chr7:44743225(+) A-I      intronic
chr7:44744009(+) A-I      intronic
chr7:44744079(+) A-I      intronic
chr7:44744379(+) A-I      intronic
chr7:44744410(+) A-I      intronic
chr7:44744427(+) A-I      intronic
chr7:44744435(+) A-I      intronic
chr7:44744484(+) A-I      intronic
chr7:44744490(+) A-I      intronic
chr7:44744499(+) A-I      intronic
chr7:44745600(+) A-I      intronic
chr7:44745635(+) A-I      intronic
chr7:44745640(+) A-I      intronic
chr7:44745654(+) A-I      intronic
chr7:44745667(+) A-I      intronic
chr7:44745736(+) A-I      intronic
chr7:44735195(+) A-I      intronic
chr7:44724513(+) A-I      intronic
chr7:44665451(+) A-I      intronic
chr7:44665491(+) A-I      intronic
chr7:44666659(+) A-I      intronic
chr7:44666660(+) A-I      intronic
chr7:44666665(+) A-I      intronic
chr7:44666776(+) A-I      intronic
chr7:44667316(+) A-I      intronic
chr7:44668284(+) A-I      intronic
chr7:44668296(+) A-I      intronic
chr7:44672031(+) A-I      intronic
chr7:44672698(+) A-I      intronic
chr7:44672758(+) A-I      intronic
chr7:44680549(+) A-I      intronic
chr7:44680610(+) A-I      intronic
chr7:44680702(+) A-I      intronic
chr7:44681790(+) A-I      intronic
chr7:44681916(+) A-I      intronic
chr7:44681919(+) A-I      intronic
chr7:44681938(+) A-I      intronic
chr7:44681951(+) A-I      intronic
chr7:44682289(+) A-I      intronic
chr7:44682290(+) A-I      intronic
chr7:44682305(+) A-I      intronic
chr7:44682650(+) A-I      intronic
chr7:44683597(+) A-I      intronic
chr7:44683627(+) A-I      intronic
chr7:44683629(+) A-I      intronic
chr7:44683683(+) A-I      intronic
chr7:44707791(+) A-I      intronic
chr7:44743132(+) A-I      intronic
chr7:44698597(+) A-I      intronic
chr7:44680654(+) A-I      intronic
chr7:44742918(+) A-I      intronic
chr7:44722587(+) A-I      intronic
chr7:44691918(+) A-I      intronic
chr7:44742941(+) A-I      intronic
chr7:44647896(+) A-I      intronic
chr7:44677289(+) A-I      intronic
chr7:44727257(+) A-I      intronic
chr7:44698454(+) A-I      intronic
chr7:44746332(+) A-I      intronic
chr7:44729112(+) A-I      intronic
chr7:44724469(+) A-I      intronic
chr7:44703480(+) A-I      intronic
chr7:44745709(+) A-I      intronic
chr7:44700490(+) A-I      intronic
chr7:44742256(+) A-I      intronic
chr7:44742757(+) A-I      intronic
chr7:44712346(+) A-I      intronic
chr7:44743396(+) A-I      intronic
chr7:44703007(+) A-I      intronic
chr7:44703472(+) A-I      intronic
chr7:44682777(+) A-I      intronic
chr7:44722961(+) A-I      intronic
chr7:44724526(+) A-I      intronic
chr7:44730895(+) A-I      intronic
chr7:44703299(+) A-I      intronic
chr7:44742854(+) A-I      intronic
chr7:44732710(+) A-I      intronic
chr7:44654638(+) A-I      intronic
chr7:44729118(+) A-I      intronic
chr7:44712805(+) A-I      intronic
chr7:44672236(+) A-I      intronic
chr7:44664751(+) A-I      intronic
chr7:44710452(+) A-I      intronic
chr7:44738281(+) A-I      intronic
chr7:44703459(+) A-I      intronic
chr7:44699774(+) A-I      intronic
chr7:44710463(+) A-I      intronic
chr7:44735051(+) A-I      intronic
chr7:44683551(+) A-I      intronic
chr7:44647401(+) A-I      intronic
chr7:44741550(+) A-I      intronic
chr7:44672273(+) A-I      intronic
chr7:44731051(+) A-I      intronic
chr7:44732516(+) A-I      intronic
chr7:44648962(+) A-I      intronic
chr7:44732484(+) A-I      intronic
chr7:44735095(+) A-I      intronic
chr7:44732724(+) A-I      intronic
chr7:44700429(+) A-I      intronic
chr7:44661377(+) A-I      intronic
chr7:44666713(+) A-I      intronic
chr7:44698528(+) A-I      intronic
chr7:44703418(+) A-I      intronic
chr7:44652013(+) A-I      intronic
chr7:44732706(+) A-I      intronic
chr7:44703247(+) A-I      intronic
chr7:44682002(+) A-I      intronic
chr7:44708948(+) A-I      intronic
chr7:44712933(+) A-I      intronic
chr7:44745249(+) A-I      intronic
chr7:44740602(+) A-I      intronic
chr7:44732705(+) A-I      intronic
chr7:44743057(+) A-I      intronic
chr7:44732720(+) A-I      intronic
chr7:44745562(+) A-I      intronic
chr7:44712261(+) A-I      intronic
chr7:44722627(+) A-I      intronic
chr7:44732489(+) A-I      intronic
chr7:44700412(+) A-I      intronic
chr7:44682658(+) A-I      intronic
chr7:44732653(+) A-I      intronic
chr7:44728404(+) A-I      intronic
chr7:44649654(+) A-I      intronic
chr7:44745684(+) A-I      intronic
chr7:44672041(+) A-I      intronic
chr7:44706595(+) A-I      intronic
chr7:44732513(+) A-I      intronic
chr7:44732455(+) A-I      intronic
chr7:44727882(+) A-I      intronic
chr7:44732507(+) A-I      intronic
chr7:44668260(+) A-I      intronic
chr7:44731000(+) A-I      intronic
chr7:44667308(+) A-I      intronic
chr7:44701441(+) A-I      intronic
chr7:44742928(+) A-I      intronic
chr7:44732704(+) A-I      intronic
chr7:44656793(+) A-I      intronic
chr7:44732652(+) A-I      intronic
chr7:44732509(+) A-I      intronic
chr7:44647724(+) A-I      intronic
chr7:44726897(+) A-I      intronic
chr7:44724637(+) A-I      intronic
chr7:44648827(+) A-I      intronic
chr7:44740508(+) A-I      intronic
chr7:44682803(+) A-I      intronic
chr7:44706683(+) A-I      intronic
chr7:44656806(+) A-I      intronic
chr7:44712871(+) A-I      intronic
chr7:44677298(+) A-I      intronic
chr7:44727127(+) A-I      intronic
chr7:44742831(+) A-I      intronic
chr7:44743405(+) A-I      intronic
chr7:44708815(+) A-I      intronic
chr7:44743063(+) A-I      intronic
chr7:44734764(+) A-I      intronic
chr7:44700476(+) A-I      intronic
chr7:44681813(+) A-I      intronic
chr7:44648850(+) A-I      intronic
chr7:44664854(+) A-I      intronic
chr7:44744495(+) A-I      intronic
chr7:44742402(+) A-I      intronic
chr7:44656631(+) A-I      intronic
chr7:44743364(+) A-I      intronic
chr7:44722358(+) A-I      intronic
chr7:44666641(+) A-I      intronic
chr7:44698535(+) A-I      intronic
chr7:44734969(+) A-I      intronic
chr7:44706740(+) A-I      intronic
chr7:44738254(+) A-I      intronic
chr7:44742975(+) A-I      intronic
chr7:44692189(+) A-I      intronic
chr7:44745207(+) A-I      intronic
chr7:44680622(+) A-I      intronic
chr7:44745171(+) A-I      intronic
chr7:44682267(+) A-I      intronic
chr7:44730890(+) A-I      intronic
chr7:44653010(+) A-I      intronic
chr7:44683780(+) A-I      intronic
chr7:44729090(+) A-I      intronic
chr7:44743143(+) A-I      intronic
chr7:44722234(+) A-I      intronic
chr7:44672705(+) A-I      intronic
chr7:44703158(+) A-I      intronic
chr7:44698671(+) A-I      intronic
chr7:44672383(+) A-I      intronic
chr7:44741500(+) A-I      intronic
chr7:44735252(+) A-I      intronic
chr7:44742786(+) A-I      intronic
chr7:44648988(+) A-I      intronic
chr7:44728372(+) A-I      intronic
chr7:44661350(+) A-I      intronic
chr7:44661217(+) A-I      intronic
chr7:44745276(+) A-I      intronic
chr7:44735237(+) A-I      intronic
chr7:44728303(+) A-I      intronic
chr7:44708030(+) A-I      intronic
chr7:44672019(+) A-I      intronic
chr7:44742839(+) A-I      intronic
chr7:44742916(+) A-I      intronic
chr7:44707946(+) A-I      intronic
chr7:44722337(+) A-I      intronic
chr7:44731388(+) A-I      intronic
chr7:44734821(+) A-I      intronic
chr7:44699748(+) A-I      intronic
chr7:44681973(+) A-I      intronic
chr7:44661392(+) A-I      intronic
chr7:44664863(+) A-I      intronic
chr7:44723095(+) A-I      intronic
chr7:44746289(+) A-I      intronic
chr7:44652736(+) A-I      intronic
chr7:44664804(+) A-I      intronic
chr7:44746491(+) A-I      intronic
chr7:44734781(+) A-I      intronic
chr7:44649002(+) A-I      intronic
chr7:44665501(+) A-I      intronic
chr7:44700452(+) A-I      intronic
chr7:44648296(+) A-I      intronic
chr7:44661218(+) A-I      intronic
chr7:44709013(+) A-I      intronic
chr7:44727207(+) A-I      intronic
chr7:44681962(+) A-I      intronic
chr7:44660812(+) A-I      intronic
chr7:44682661(+) A-I      intronic
chr7:44745725(+) A-I      intronic
chr7:44677234(+) A-I      intronic
chr7:44672695(+) A-I      intronic
chr7:44648241(+) A-I      intronic
chr7:44729073(+) A-I      intronic
chr7:44724482(+) A-I      intronic
chr7:44655474(+) A-I      intronic
chr7:44743135(+) A-I      intronic
chr7:44734978(+) A-I      intronic
chr7:44681912(+) A-I      intronic
chr7:44713816(+) A-I      intronic
chr7:44734843(+) A-I      intronic
chr7:44744368(+) A-I      intronic
chr7:44661425(+) A-I      intronic
chr7:44699798(+) A-I      intronic
chr7:44721890(+) A-I      intronic
chr7:44671919(+) A-I      intronic
chr7:44672384(+) A-I      intronic
chr7:44664749(+) A-I      intronic
chr7:44730908(+) A-I      intronic
chr7:44728932(+) A-I      intronic
chr7:44722969(+) A-I      intronic
chr7:44698616(+) A-I      intronic
chr7:44700270(+) A-I      intronic
chr7:44681760(+) A-I      intronic
chr7:44706647(+) A-I      intronic
chr7:44698564(+) A-I      intronic
chr7:44706689(+) A-I      intronic
chr7:44698499(+) A-I      intronic
chr7:44735143(+) A-I      intronic
chr7:44742805(+) A-I      intronic
chr7:44698656(+) A-I      intronic
chr7:44648949(+) A-I      intronic
chr7:44648989(+) A-I      intronic
chr7:44744476(+) A-I      intronic
chr7:44727715(+) A-I      intronic
chr7:44722313(+) A-I      intronic
chr7:44727827(+) A-I      intronic
chr7:44732886(+) A-I      intronic
chr7:44680640(+) A-I      intronic
chr7:44741576(+) A-I      intronic
chr7:44681876(+) A-I      intronic
chr7:44703216(+) A-I      intronic
chr7:44671931(+) A-I      intronic
chr7:44741658(+) A-I      intronic
chr7:44723052(+) A-I      intronic
chr7:44731024(+) A-I      intronic
chr7:44681972(+) A-I      intronic
chr7:44706770(+) A-I      intronic
chr7:44745267(+) A-I      intronic
chr7:44745708(+) A-I      intronic
chr7:44742868(+) A-I      intronic
chr7:44743390(+) A-I      intronic
chr7:44735150(+) A-I      intronic
chr7:44731094(+) A-I      intronic
chr7:44743377(+) A-I      intronic
chr7:44707916(+) A-I      intronic
chr7:44741595(+) A-I      intronic
chr7:44734957(+) A-I      intronic
chr7:44735151(+) A-I      intronic
chr7:44712368(+) A-I      intronic
chr7:44728889(+) A-I      intronic
chr7:44721934(+) A-I      intronic
chr7:44712859(+) A-I      intronic
chr7:44703352(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED OGDH
chr7:44732484(+) A-I intron -    22028664
chr7:44732489(+) A-I intron -    22028664
chr7:44732507(+) A-I intron -    22028664
chr7:44732509(+) A-I intron -    22028664
chr7:44732513(+) A-I intron -    22028664
chr7:44732516(+) A-I intron -    22028664
chr7:44732525(+) A-I intron -    22028664
chr7:44732652(+) A-I intron -    22028664
chr7:44732653(+) A-I intron -    22028664
chr7:44732658(+) A-I intron -    22028664
chr7:44732704(+) A-I intron -    22028664
chr7:44732705(+) A-I intron -    22028664
chr7:44732706(+) A-I intron -    22028664
chr7:44732710(+) A-I intron -    22028664
chr7:44732720(+) A-I intron -    22028664
chr7:44732724(+) A-I intron -    22028664
chr7:44647401(+) A-G intron -    22484847
chr7:44647886(+) A-G intron -    22484847
chr7:44648151(+) A-G intron -    22484847
chr7:44652013(+) A-G intron -    22484847
chr7:44656631(+) A-G intron -    22484847
chr7:44660873(+) A-G intron -    22484847
chr7:44661217(+) A-G intron -    22484847
chr7:44661218(+) A-G intron -    22484847
chr7:44661350(+) A-G intron -    22484847
chr7:44661377(+) A-G intron -    22484847
chr7:44661392(+) A-G intron -    22484847
chr7:44664749(+) A-G intron -    22484847
chr7:44664751(+) A-G intron -    22484847
chr7:44665511(+) A-G intron -    22484847
chr7:44666641(+) A-G intron -    22484847
chr7:44666713(+) A-G intron -    22484847
chr7:44667308(+) A-G intron -    22484847
chr7:44669267(+) T-C intron -    22484847
chr7:44672075(+) A-G intron -    22484847
chr7:44672383(+) A-G intron -    22484847
chr7:44672384(+) A-G intron -    22484847
chr7:44680640(+) A-G intron -    22484847
chr7:44680707(+) A-G intron -    22484847
chr7:44681813(+) A-G intron -    22484847
chr7:44691918(+) A-G intron -    22484847
chr7:44692189(+) A-G intron -    22484847
chr7:44693285(+) A-C intron -    22484847
chr7:44698454(+) A-G intron -    22484847
chr7:44698499(+) A-G intron -    22484847
chr7:44698535(+) A-G intron -    22484847
chr7:44698597(+) A-G intron -    22484847
chr7:44698656(+) A-G intron -    22484847
chr7:44698671(+) A-G intron -    22484847
chr7:44699849(+) A-G intron -    22484847
chr7:44700385(+) A-G intron -    22484847
chr7:44700406(+) A-G intron -    22484847
chr7:44700412(+) A-G intron -    22484847
chr7:44700420(+) A-G intron -    22484847
chr7:44700428(+) A-G intron -    22484847
chr7:44700429(+) A-G intron -    22484847
chr7:44700476(+) A-G intron -    22484847
chr7:44700490(+) A-G intron -    22484847
chr7:44703068(+) T-C intron -    22484847
chr7:44703200(+) G-T intron -    22484847
chr7:44706574(+) A-G intron -    22484847
chr7:44706595(+) A-G intron -    22484847
chr7:44707782(+) A-G intron -    22484847
chr7:44708030(+) A-G intron -    22484847
chr7:44710463(+) A-G intron -    22484847
chr7:44712261(+) A-G intron -    22484847
chr7:44712346(+) A-G intron -    22484847
chr7:44722337(+) A-G intron -    22484847
chr7:44722358(+) A-G intron -    22484847
chr7:44722898(+) A-G intron -    22484847
chr7:44722929(+) A-G intron -    22484847
chr7:44722945(+) A-G intron -    22484847
chr7:44722957(+) A-G intron -    22484847
chr7:44722961(+) A-G intron -    22484847
chr7:44723065(+) A-G intron -    22484847
chr7:44724468(+) A-G intron -    22484847
chr7:44724469(+) A-G intron -    22484847
chr7:44724482(+) A-G intron -    22484847
chr7:44724526(+) A-G intron -    22484847
chr7:44724589(+) A-G intron -    22484847
chr7:44724637(+) A-G intron -    22484847
chr7:44726288(+) C-T intron -    22484847
chr7:44726897(+) A-G intron -    22484847
chr7:44727127(+) A-G intron -    22484847
chr7:44727708(+) A-G intron -    22484847
chr7:44728236(+) A-G intron -    22484847
chr7:44729073(+) A-G intron -    22484847
chr7:44729090(+) A-G intron -    22484847
chr7:44730890(+) A-G intron -    22484847
chr7:44730895(+) A-G intron -    22484847
chr7:44734756(+) A-G intron -    22484847
chr7:44734764(+) A-G intron -    22484847
chr7:44734781(+) A-G intron -    22484847
chr7:44735095(+) A-G intron -    22484847
chr7:44735171(+) A-G intron -    22484847
chr7:44735252(+) A-G intron -    22484847
chr7:44741595(+) A-G intron -    22484847
chr7:44742757(+) A-G intron -    22484847
chr7:44742829(+) A-G intron -    22484847
chr7:44742831(+) A-G intron -    22484847
chr7:44743148(+) A-G intron -    22484847
chr7:44743192(+) A-G intron -    22484847
chr7:44743268(+) A-G intron -    22484847
chr7:44743377(+) A-G intron -    22484847
chr7:44744349(+) A-G intron -    22484847
chr7:44745276(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase OGDH
chr7:44646248-44646249(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr7:44662419-44662420(+) m6A 5'UTR//intron       24284625//24209618//25456834//24981863//22575960//22608085
chr7:44663928-44663929(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr7:44663936-44663937(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22575960//22608085
chr7:44663957-44663958(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr7:44663996-44663997(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:44664005-44664006(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:44664018-44664019(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:44664038-44664039(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr7:44664098-44664099(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr7:44664108-44664109(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr7:44664144-44664145(+) m6A CDS       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr7:44684932-44684933(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr7:44685064-44685065(+) m6A CDS//intron       24284625//22575960
chr7:44685079-44685080(+) m6A CDS//intron       24284625//22575960
chr7:44687065-44687066(+) m6A CDS//intron       24284625
chr7:44687283-44687284(+) m6A CDS//intron       24284625
chr7:44687313-44687314(+) m6A CDS//intron       24284625
chr7:44687349-44687350(+) m6A CDS//intron       24284625
chr7:44713469-44713470(+) m6A CDS//exon//intron       22575960
chr7:44713508-44713509(+) m6A CDS//exon//intron       22575960
chr7:44714094-44714095(+) m6A CDS//exon       22575960
chr7:44714128-44714129(+) m6A CDS//exon       22575960
chr7:44714821-44714822(+) m6A CDS//exon       -
chr7:44715635-44715636(+) m6A CDS       22575960
chr7:44715703-44715704(+) m6A CDS       22575960
chr7:44715714-44715715(+) m6A CDS       22575960
chr7:44721378-44721379(+) m6A CDS       24284625
chr7:44721444-44721445(+) Cm CDS       -
chr7:44733514-44733515(+) m6A CDS       22575960
chr7:44736138-44736139(+) m6A CDS       -
chr7:44736532-44736533(+) m6A CDS       -
chr7:44736554-44736555(+) m6A CDS       -
chr7:44736559-44736560(+) m6A CDS       -
chr7:44736566-44736567(+) m6A CDS       -
chr7:44737003-44737004(+) m6A CDS       -
chr7:44737011-44737012(+) m6A CDS       -
chr7:44737027-44737028(+) m6A CDS       -
chr7:44747299-44747300(+) m6A CDS       -
chr7:44747306-44747307(+) m6A CDS       -
chr7:44747491-44747492(+) m6A CDS       -
chr7:44747526-44747527(+) m6A CDS       24284625
chr7:44747557-44747558(+) m6A 3'UTR//CDS       24284625
chr7:44747587-44747588(+) m6A 3'UTR//CDS       24284625//24981863//22575960
chr7:44748107-44748108(+) m6A 3'UTR       24284625//25456834
chr7:44748385-44748386(+) m6A 3'UTR       24284625//24981863
chr7:44748435-44748436(+) m6A 3'UTR       24284625//24981863
chr7:44748567-44748568(+) m6A 3'UTR       24284625
chr7:44748610-44748611(+) m6A 3'UTR       24284625
chr7:44748616-44748617(+) m6A 3'UTR       24284625
chr7:44748648-44748649(+) m6A 3'UTR       24284625

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-190a-5p
Exosome Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Plasma     24683445
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Hepatocellular carcinoma cell line (HepG2)|Lung epithelial carcinoma cell line (A549)     20615901
Microvesicle Colon cancer cell line (LIM1863)|Mesenchymal stem cells|Urine     -
OGDH
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HeLa-S3 cells     -
Exosome Blood     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-190a-5p
Interactor2: OGDH

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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