Basic Information:

  VIRBase ID:  

HHID00047883

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30c-5p:  MIMAT0000244          RAP2C:  NM_001271187     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-30c-5p	RAP2C
miRBase Accession/Entrez ID	MIMAT0000244	57826
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	-

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-30c-5p	rs1273660120 chr1:40757310    C/G rs757010411 chr1:40757312    A/G rs778882994 chr1:40757318    T/G rs113749278 chr6:71377017    A/G rs113749278 chr6:71377017    A/T rs1290581693 chr6:71377003    G/A rs1296517452 chr6:71377016    G/T rs1360882118 chr6:71377008    G/C rs369489437 chr6:71377011    T/C rs374192008 chr6:71377013    T/C rs1357662785 chr6:71377024    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	RAP2C	chrX:131342288(-) A-I      intronic chrX:131344490(-) A-I      intronic chrX:131344485(-) A-I      intronic chrX:131344484(-) A-I      intronic chrX:131342168(-) A-I      intronic chrX:131344499(-) A-I      intronic chrX:131344548(-) A-I      intronic chrX:131344551(-) A-I      intronic chrX:131344464(-) A-I      intronic chrX:131342240(-) A-I      intronic chrX:131342229(-) A-I      intronic chrX:131342219(-) A-I      intronic chrX:131342200(-) A-I      intronic chrX:131342170(-) A-I      intronic chrX:131342197(-) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	RAP2C	chrX:131344650(-) A-I intron -    22327324 chrX:131344608(-) A-I intron -    21960545

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	RAP2C	chrX:131339456-131339457(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22575960//22608085 chrX:131339536-131339537(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//22575960//22608085 chrX:131339551-131339552(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//27371828//22575960//22608085 chrX:131339573-131339574(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chrX:131339609-131339610(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chrX:131348253-131348254(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chrX:131348282-131348283(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22575960//22608085 chrX:131348314-131348315(-) m6A CDS//exon       24284625//24209618//24981863//28052920//26404942//27773535//27371828//22608085 chrX:131348384-131348385(-) m6A CDS//exon       24284625//24981863//27371828//22608085 chrX:131351115-131351116(-) m6A 5'UTR//CDS//exon       24284625//24981863//27371828//22575960//22608085 chrX:131351126-131351127(-) m6A 5'UTR//CDS//exon       24284625//24981863//27371828//22575960//22608085 chrX:131351156-131351157(-) m6A 5'UTR//CDS//exon       24284625//24981863//27773535//27371828//22575960//22608085 chrX:131351217-131351218(-) m6A CDS//intron       24284625//24981863//27773535//27371828//22575960//22608085 chrX:131351299-131351300(-) m6A 5'UTR//intron       24284625//24981863//27773535//22608085 chrX:131351612-131351613(-) Y 5'UTR//intron       26075521 chrX:131351799-131351800(-) m6A 5'UTR//exon//intron       27371828//27773536 chrX:131352018-131352019(-) m6A 5'UTR//intron       24209618//27371828//27773536

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-30c-5p	Cytoplasm Nasopharyngeal carcinoma cells     20498841 Cytoplasm Cell line (HeLa)     21695135 Cytoplasm Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059 Exosome Human cervical cancer cell line (HeLa)     25760330 Exosome Breast cancer cell line (MCF-7)     20976003 Exosome Primary dendritic cells|T cell line (J77)     21505438 Exosome Brain tissue     23382797 Exosome Plasma     23663360 Exosome Human mast cell line (HMC-1)     24009880 Exosome Blood|B lymphoblastoid cells|Breast milk|Endothelial cells|Epithelial cells|Lymphoma tissue|Mast cells|Seminal fluid|Tongue tissue     - Microvesicle Seminal plasma     23539611 Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells|Urine     - Mitochondrion Skeletal muscle myoblasts     21637849 Mitochondrion Cell line (HEK-293|HeLa)     22984580 Nucleolus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059 Nucleus Breast adenocarcinoma cells (MCF-7)|Cervical adenocarcinoma cells (HeLa)     24918059 Nucleus Nasopharyngeal carcinoma cells     20498841 Nucleus Colon adenocarcinoma cells     20864815 Nucleus Neural progenitor cells     21363885
	RAP2C	Cytosol Human myelogenous leukemia cell line (K-562)     21613539 Exosome Blood     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)     -

Related Drug Information:

Resource	Symbol	Drug Name	PubChem ID	Function
ncDR	hsa-miR-30c-5p	2-Amino-3H-phenoxazin-3-one 72725 Drug resistant Resorufin 69462 Drug resistant Hopeaphenol 495605 Drug resistant 2,3-Dimethylbenzo[g]quinoxaline-5,10-dione 353644 Drug resistant 6,7-Dimethoxy-4-(3-hydroxy-4-methylanilino)quinazoline hydrochloride 21701565 Drug sensitive Erlotinib 176870 Drug sensitive (S)-Morpholin-3-ylmethyl (4-((1-(3-fluorobenzyl)-1H-indazol-5-yl)amino)-5-methylpyrrolo[2,1-f][1,2,4]triazin-6-yl)carbamate 10437018 Drug sensitive 1,2-benzo-8-(d,l-alanyl)-3-phenoxazone nitrate salt - Drug resistant 2-chloro-3-amino-5,8-dihydoxy-1,4-naphthoquinone - Drug resistant benzo[b]naphtho[2,3-d]furan-6,11-dione, 4-chloro-3-hydroxy - Drug resistant organosulfur compound - Drug sensitive

Resource	Symbol	Drug Name	PubChem ID	Function	Link
RNAInter	hsa-miR-30c-5p	Curcumin 969516 Drug interaction    RC00001607 Vincristine 5978 Drug interaction    RC00001599 Estradiol 5757 Drug interaction    RC00001598 Mitomycin 5746 Drug interaction    RC00001597 Eloxatine 5310940 Drug interaction    RC00001609 Imatinib 5291 Drug interaction    RC00001596 Morphine 5288826 Drug interaction    RC00001608 Docosahexaenoic acid 445580 Drug interaction    RC00001606 Cyclopamine 442972 Drug interaction    RC00001605 Carboplatinum 38904 Drug interaction    RC00001603 Paclitaxel 36314 Drug interaction    RC00001602 Doxorubicin 31703 Drug interaction    RC00001601 cis-Diaminedichloroplatinum 2767 Drug interaction    RC00001595 Arsenic trioxide 14888 Drug interaction    RC00001600 Gefitinib 123631 Drug interaction    RC00001604 platinum-based doublet chemotherapy - Drug interaction    RC00001610 TRAIL therapy - Drug interaction    RC00001611 Hydroxamic acid HDACi LAQ824 - Drug interaction    RC00001612 Trastuzumab - Drug interaction    RC00001613

Resource	Symbol	Drug Name	PubChem ID	PMID
NoncoRNA	hsa-miR-30c-5p	Cisplatin 5702198       28222434

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-30c-5p
Interactor2: RAP2C

Evidence Support:

Weak-Evidence	PAR-CLIP
Support Database	ViRBase

References:

PMID	22291592	Target region	3'UTR
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells	Interactor2 expression	None
Description	We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.