Detail Information

Basic Information:


  VIRBase ID:  

HHID00047615

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-199a-3p:           LRRC40:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-199a-3p LRRC40
miRBase
Accession/Entrez ID		 MIMAT0000232 55631
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - dJ677H15.1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-199a-3p
rs1244221007 chr19:10817432    C/G
rs1281197836 chr19:10817437    G/A
rs1315393563 chr19:10817435    A/G
rs746524562 chr19:10817434    A/G
rs746524562 chr19:10817434    A/T
rs961039315 chr19:10817436    T/C
rs990986317 chr19:10817442    G/A
rs1161021809 chr1:172144560    A/G
rs1482780016 chr19:10817448    T/C
rs183664554 chr19:10817443    A/G
rs771220698 chr19:10817447    C/T
rs776326431 chr19:10817446    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LRRC40
chr1:70626806(-) A-I      intronic
chr1:70627148(-) A-I      intronic
chr1:70629908(-) A-I      intronic
chr1:70629964(-) A-I      intronic
chr1:70629967(-) A-I      intronic
chr1:70632126(-) A-I      intronic
chr1:70632186(-) A-I      intronic
chr1:70662067(-) A-I      intronic
chr1:70632228(-) A-I      intronic
chr1:70632231(-) A-I      intronic
chr1:70662084(-) A-I      intronic
chr1:70662085(-) A-I      intronic
chr1:70663138(-) A-I      intronic
chr1:70663518(-) A-I      intronic
chr1:70663519(-) A-I      intronic
chr1:70663583(-) A-I      intronic
chr1:70663597(-) A-I      intronic
chr1:70663641(-) A-I      intronic
chr1:70632257(-) A-I      intronic
chr1:70632998(-) A-I      intronic
chr1:70633051(-) A-I      intronic
chr1:70633118(-) A-I      intronic
chr1:70633475(-) A-I      intronic
chr1:70633486(-) A-I      intronic
chr1:70633501(-) A-I      intronic
chr1:70633525(-) A-I      intronic
chr1:70633573(-) A-I      intronic
chr1:70649374(-) A-I      intronic
chr1:70656161(-) A-I      intronic
chr1:70662014(-) A-I      intronic
chr1:70662030(-) A-I      intronic
chr1:70611935(-) A-I      intronic
chr1:70618823(-) A-I      intronic
chr1:70666739(-) A-I      intronic
chr1:70668609(-) A-I      intronic
chr1:70668775(-) A-I      intronic
chr1:70669129(-) A-I      intronic
chr1:70632304(-) A-I      intronic
chr1:70629043(-) A-I      intronic
chr1:70668864(-) A-I      intronic
chr1:70633060(-) A-I      intronic
chr1:70632986(-) A-I      intronic
chr1:70632309(-) A-I      intronic
chr1:70632197(-) A-I      intronic
chr1:70663724(-) A-I      intronic
chr1:70668712(-) A-I      intronic
chr1:70626896(-) A-I      intronic
chr1:70633026(-) A-I      intronic
chr1:70628950(-) A-I      intronic
chr1:70632254(-) A-I      intronic
chr1:70627172(-) A-I      intronic
chr1:70628999(-) A-I      intronic
chr1:70629005(-) A-I      intronic
chr1:70628973(-) A-I      intronic
chr1:70662150(-) A-I      intronic
chr1:70633196(-) A-I      intronic
chr1:70662202(-) A-I      intronic
chr1:70663711(-) A-I      intronic
chr1:70633499(-) A-I      intronic
chr1:70668706(-) A-I      intronic
chr1:70627123(-) A-I      intronic
chr1:70649359(-) A-I      intronic
chr1:70663663(-) A-I      intronic
chr1:70663709(-) A-I      intronic
chr1:70630034(-) A-I      intronic
chr1:70665964(-) A-I      intronic
chr1:70633365(-) A-I      intronic
chr1:70628882(-) A-I      intronic
chr1:70633497(-) A-I      intronic
chr1:70633426(-) A-I      intronic
chr1:70632232(-) A-I      intronic
chr1:70663645(-) A-I      intronic
chr1:70633571(-) A-I      intronic
chr1:70627194(-) A-I      intronic
chr1:70629042(-) A-I      intronic
chr1:70628887(-) A-I      intronic
chr1:70649469(-) A-I      intronic
chr1:70632258(-) A-I      intronic
chr1:70633124(-) A-I      intronic
chr1:70633570(-) A-I      intronic
chr1:70649356(-) A-I      intronic
chr1:70633397(-) A-I      intronic
chr1:70649396(-) A-I      intronic
chr1:70627178(-) A-I      intronic
chr1:70630026(-) A-I      intronic
chr1:70649492(-) A-I      intronic
chr1:70663664(-) A-I      intronic
chr1:70656249(-) A-I      intronic
chr1:70633191(-) A-I      intronic
chr1:70668733(-) A-I      intronic
chr1:70633436(-) A-I      intronic
chr1:70633086(-) A-I      intronic
chr1:70632124(-) A-I      intronic
chr1:70649849(-) A-I      intronic
chr1:70627185(-) A-I      intronic
chr1:70632099(-) A-I      intronic
chr1:70628965(-) A-I      intronic
chr1:70627151(-) A-I      intronic
chr1:70632224(-) A-I      intronic
chr1:70626828(-) A-I      intronic
chr1:70662151(-) A-I      intronic
chr1:70633394(-) A-I      intronic
chr1:70649850(-) A-I      intronic
chr1:70649523(-) A-I      intronic
chr1:70611890(-) A-I      intronic
chr1:70626836(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LRRC40
chr1:70624905(-) T-C intron -    22484847
chr1:70627151(-) A-G intron -    22484847
chr1:70628882(-) A-G intron -    22484847
chr1:70628887(-) A-G intron -    22484847
chr1:70630026(-) A-G intron -    22484847
chr1:70630034(-) A-G intron -    22484847
chr1:70632124(-) A-G intron -    22484847
chr1:70632197(-) A-G intron -    22484847
chr1:70632224(-) A-G intron -    22484847
chr1:70632232(-) A-G intron -    22484847
chr1:70632254(-) A-G intron -    22484847
chr1:70632258(-) A-G intron -    22484847
chr1:70632986(-) A-G intron -    22484847
chr1:70633026(-) A-G intron -    22484847
chr1:70633060(-) A-G intron -    22484847
chr1:70633086(-) A-G intron -    22484847
chr1:70633124(-) A-G intron -    22484847
chr1:70633191(-) A-G intron -    22484847
chr1:70633397(-) A-G intron -    22484847
chr1:70633436(-) A-G intron -    22484847
chr1:70633497(-) A-G intron -    22484847
chr1:70633499(-) A-G intron -    22484847
chr1:70633570(-) A-G intron -    22484847
chr1:70633571(-) A-G intron -    22484847
chr1:70649396(-) A-G intron -    22484847
chr1:70649523(-) A-G intron -    22484847
chr1:70649849(-) A-G intron -    22484847
chr1:70649850(-) A-G intron -    22484847
chr1:70662150(-) A-G intron -    22484847
chr1:70662151(-) A-G intron -    22484847
chr1:70662202(-) A-G intron -    22484847
chr1:70663645(-) A-G intron -    22484847
chr1:70663711(-) A-G intron -    22484847
chr1:70665964(-) A-G intron -    22484847
chr1:70668706(-) A-G intron -    22484847
chr1:70668712(-) A-G intron -    22484847
chr1:70668864(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LRRC40
chr1:70610893-70610894(-) m6A 3'UTR       27773535
chr1:70610915-70610916(-) m6A 3'UTR       27773535
chr1:70610954-70610955(-) m6A 3'UTR       27773535
chr1:70621472-70621473(-) m6A CDS       27773535
chr1:70625018-70625019(-) m6A CDS       27773535
chr1:70625085-70625086(-) m6A CDS       27773535
chr1:70625113-70625114(-) m6A CDS       24981863//27773535
chr1:70671083-70671084(-) m6A CDS       27773535
chr1:70671098-70671099(-) m6A CDS       27773535
chr1:70671122-70671123(-) Cm CDS       -
chr1:70671158-70671159(-) m6A CDS       24209618//24981863//27773535//27371828//22608085
chr1:70671224-70671225(-) m6A 5'UTR       24209618//25456834//24981863//27371828//22608085
chr1:70671231-70671232(-) m6A 5'UTR       24209618//25456834//24981863//27371828//22608085
chr1:70671238-70671239(-) m6A 5'UTR       24209618//25456834//24981863//27371828//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-199a-3p
Exosome Peripheral blood mononuclear cells     19002258
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome B cell lymphoma cell lines|EBV-transformed lymphoblastoid B cells     25242326
Exosome Blood|Endothelial cells     -
Extracellular Vesicle Liposarcoma cell lines (Lipo224B|Lipo246|Lipo863|LPS141)|Preadipocytes     28588009
Microvesicle Plasma     19002258
Microvesicle Plasma     23077538
Microvesicle Follicular fluid     23666971
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
LRRC40
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)     -
Ribosome-free cytosol Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-199a-3p
Curcumin 969516 Drug interaction    RC00001534
Ethanol 702 Drug interaction    RC00001528
Gemcitabine 60750 Drug interaction    RC00001533
Enoxacin 3229 Drug interaction    RC00001530
Emodin 3220 Drug interaction    RC00001529
Doxorubicin 31703 Drug interaction    RC00001532
Arsenic trioxide 14888 Drug interaction    RC00001531
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-199a-3p
Cisplatin 5702198       26261572
Cisplatin 5702198       28126676
Cisplatin 5702198       28422725
Cisplatin 5702198       28743276
Cisplatin 5702198       29436681
Cisplatin 5702198       29866054
Carboplatin 426756       29866054
Doxorubicin 31703       20501828
Doxorubicin 31703       21055388
Doxorubicin 31703       26079799
Doxorubicin 31703       29866054
Docetaxel 148124       21807947

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-199a-3p
Interactor2: LRRC40

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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