Detail Information

Basic Information:


  VIRBase ID:  

HHID00044899

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30a-3p:           PIK3AP1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30a-3p PIK3AP1
miRBase
Accession/Entrez ID		 MIMAT0000088 118788
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BCAP

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30a-3p
rs149150037 chr6:71403567    G/A
rs149150037 chr6:71403567    G/C
rs370184894 chr6:71403566    C/A
rs370184894 chr6:71403566    C/T
rs552541514 chr6:71403558    C/G
rs745605208 chr6:71403563    ATCCG/A
rs746505574 chr6:71403557    G/A
rs746505574 chr6:71403557    G/T
rs746965145 chr6:71403554    GCT/G
rs750918072 chr6:71403564    T/C
rs765735953 chr6:71403560    A/T
rs770865356 chr6:71403559    A/AC
rs776574456 chr6:71403560    A/AAGCTGGAGT
rs368070339 chr6:71403571    G/A
rs769702885 chr6:71403570    TG/T
rs775921090 chr6:71403574    AGCC/A
rs781617967 chr6:71403573    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR PIK3AP1
chr10:98467323(-) A-I      intronic
chr10:98450224(-) A-I      intronic
chr10:98467758(-) A-I      intronic
chr10:98469286(-) A-I      intronic
chr10:98469195(-) A-I      intronic
chr10:98462801(-) A-I      intronic
chr10:98364781(-) A-I      intronic
chr10:98412912(-) A-I      intronic
chr10:98439202(-) A-I      intronic
chr10:98439203(-) A-I      intronic
chr10:98452222(-) A-I      intronic
chr10:98431694(-) A-I      intronic
chr10:98413383(-) A-I      intronic
chr10:98361737(-) A-I      intronic
chr10:98452223(-) A-I      intronic
chr10:98452231(-) A-I      intronic
chr10:98452268(-) A-I      intronic
chr10:98431687(-) A-I      intronic
chr10:98454512(-) A-I      intronic
chr10:98364790(-) A-I      intronic
chr10:98465789(-) A-I      intronic
chr10:98412218(-) A-I      intronic
chr10:98364799(-) A-I      intronic
chr10:98388826(-) A-I      intronic
chr10:98420914(-) A-I      intronic
chr10:98400491(-) A-I      intronic
chr10:98365598(-) A-I      intronic
chr10:98420773(-) A-I      intronic
chr10:98437946(-) A-I      intronic
chr10:98413040(-) A-I      intronic
chr10:98462807(-) A-I      intronic
chr10:98464429(-) A-I      intronic
chr10:98465680(-) A-I      intronic
chr10:98412907(-) A-I      intronic
chr10:98413304(-) A-I      intronic
chr10:98365599(-) A-I      intronic
chr10:98415181(-) A-I      intronic
chr10:98457403(-) A-I      intronic
chr10:98464440(-) A-I      intronic
chr10:98415088(-) A-I      intronic
chr10:98462924(-) A-I      intronic
chr10:98412208(-) A-I      intronic
chr10:98395496(-) A-I      intronic
chr10:98462722(-) A-I      intronic
chr10:98438178(-) A-I      intronic
chr10:98365637(-) A-I      intronic
chr10:98400647(-) A-I      intronic
chr10:98364682(-) A-I      intronic
chr10:98415044(-) A-I      intronic
chr10:98450291(-) A-I      intronic
chr10:98450295(-) A-I      intronic
chr10:98437852(-) A-I      intronic
chr10:98467322(-) A-I      intronic
chr10:98400539(-) A-I      intronic
chr10:98388804(-) A-I      intronic
chr10:98400475(-) A-I      intronic
chr10:98365661(-) A-I      intronic
chr10:98468850(-) A-I      intronic
chr10:98454307(-) A-I      intronic
chr10:98400483(-) A-I      intronic
chr10:98464292(-) A-I      intronic
chr10:98415004(-) A-I      intronic
chr10:98462108(-) A-I      intronic
chr10:98468653(-) A-I      intronic
chr10:98413370(-) A-I      intronic
chr10:98468719(-) A-I      intronic
chr10:98462798(-) A-I      intronic
chr10:98438109(-) A-I      intronic
chr10:98467210(-) A-I      intronic
chr10:98412982(-) A-I      intronic
chr10:98413159(-) A-I      intronic
chr10:98412920(-) A-I      intronic
chr10:98412905(-) A-I      intronic
chr10:98464363(-) A-I      intronic
chr10:98468806(-) A-I      intronic
chr10:98467218(-) A-I      intronic
chr10:98390514(-) A-I      intronic
chr10:98413517(-) A-I      intronic
chr10:98400498(-) A-I      intronic
chr10:98462173(-) A-I      intronic
chr10:98413518(-) A-I      intronic
chr10:98467116(-) A-I      intronic
chr10:98431713(-) A-I      intronic
chr10:98431700(-) A-I      intronic
chr10:98473686(-) A-I      intronic
chr10:98468842(-) A-I      intronic
chr10:98412190(-) A-I      intronic
chr10:98468766(-) A-I      intronic
chr10:98468220(-) A-I      intronic
chr10:98468197(-) A-I      intronic
chr10:98467152(-) A-I      intronic
chr10:98413105(-) A-I      intronic
chr10:98361752(-) A-I      intronic
chr10:98365675(-) A-I      intronic
chr10:98413080(-) A-I      intronic
chr10:98465855(-) A-I      intronic
chr10:98461995(-) A-I      intronic
chr10:98413038(-) A-I      intronic
chr10:98439209(-) A-I      intronic
chr10:98464309(-) A-I      intronic
chr10:98465831(-) A-I      intronic
chr10:98365741(-) A-I      intronic
chr10:98384363(-) A-I      intronic
chr10:98361891(-) A-I      intronic
chr10:98465830(-) A-I      intronic
chr10:98361912(-) A-I      intronic
chr10:98462128(-) A-I      intronic
chr10:98462144(-) A-I      intronic
chr10:98438080(-) A-I      intronic
chr10:98462757(-) A-I      intronic
chr10:98361913(-) A-I      intronic
chr10:98395479(-) A-I      intronic
chr10:98364647(-) A-I      intronic
chr10:98395493(-) A-I      intronic
chr10:98364777(-) A-I      intronic
chr10:98465825(-) A-I      intronic
chr10:98412996(-) A-I      intronic
chr10:98397181(-) A-I      intronic
chr10:98468716(-) A-I      intronic
chr10:98389424(-) A-I      intronic
chr10:98465845(-) A-I      intronic
chr10:98467220(-) A-I      intronic
chr10:98413342(-) A-I      intronic
chr10:98415178(-) A-I      intronic
chr10:98467178(-) A-I      intronic
chr10:98468662(-) A-I      intronic
chr10:98412959(-) A-I      intronic
chr10:98385784(-) A-I      intronic
chr10:98465508(-) A-I      intronic
chr10:98462001(-) A-I      intronic
chr10:98413412(-) A-I      intronic
chr10:98465513(-) A-I      intronic
chr10:98413049(-) A-I      intronic
chr10:98468867(-) A-I      intronic
chr10:98361765(-) A-I      intronic
chr10:98384339(-) A-I      intronic
chr10:98389543(-) A-I      intronic
chr10:98462811(-) A-I      intronic
chr10:98468705(-) A-I      intronic
chr10:98454300(-) A-I      intronic
chr10:98464353(-) A-I      intronic
chr10:98413413(-) A-I      intronic
chr10:98462230(-) A-I      intronic
chr10:98457283(-) A-I      intronic
chr10:98360996(-) A-I      intronic
chr10:98412979(-) A-I      intronic
chr10:98467245(-) A-I      intronic
chr10:98464312(-) A-I      intronic
chr10:98462174(-) A-I      intronic
chr10:98465628(-) A-I      intronic
chr10:98373029(-) A-I      intronic
chr10:98364755(-) A-I      intronic
chr10:98462134(-) A-I      intronic
chr10:98465536(-) A-I      intronic
chr10:98438170(-) A-I      intronic
chr10:98361726(-) A-I      intronic
chr10:98467329(-) A-I      intronic
chr10:98413418(-) A-I      intronic
chr10:98457300(-) A-I      intronic
chr10:98415026(-) A-I      intronic
chr10:98462731(-) A-I      intronic
chr10:98437885(-) A-I      intronic
chr10:98450304(-) A-I      intronic
chr10:98462090(-) A-I      intronic
chr10:98468722(-) A-I      intronic
chr10:98454406(-) A-I      intronic
chr10:98450220(-) A-I      intronic
chr10:98464367(-) A-I      intronic
chr10:98464230(-) A-I      intronic
chr10:98467187(-) A-I      intronic
chr10:98464240(-) A-I      intronic
chr10:98364013(-) A-I      intronic
chr10:98464442(-) A-I      intronic
chr10:98464388(-) A-I      intronic
chr10:98413373(-) A-I      intronic
chr10:98365719(-) A-I      intronic
chr10:98365629(-) A-I      intronic
chr10:98467203(-) A-I      intronic
chr10:98365791(-) A-I      intronic
chr10:98464470(-) A-I      intronic
chr10:98454451(-) A-I      intronic
chr10:98467188(-) A-I      intronic
chr10:98468807(-) A-I      intronic
chr10:98365717(-) A-I      intronic
chr10:98465442(-) A-I      intronic
chr10:98467223(-) A-I      intronic
chr10:98384413(-) A-I      intronic
chr10:98467115(-) A-I      intronic
chr10:98361868(-) A-I      intronic
chr10:98464218(-) A-I      intronic
chr10:98462088(-) A-I      intronic
chr10:98415142(-) A-I      intronic
chr10:98415043(-) A-I      intronic
chr10:98438110(-) A-I      intronic
chr10:98361835(-) A-I      intronic
chr10:98468837(-) A-I      intronic
chr10:98431673(-) A-I      intronic
chr10:98423117(-) A-I      intronic
chr10:98462248(-) A-I      intronic
chr10:98413050(-) A-I      intronic
chr10:98365693(-) A-I      intronic
chr10:98468768(-) A-I      intronic
chr10:98457410(-) A-I      intronic
chr10:98365729(-) A-I      intronic
chr10:98462247(-) A-I      intronic
chr10:98431790(-) A-I      intronic
chr10:98437859(-) A-I      intronic
chr10:98457455(-) A-I      intronic
chr10:98454492(-) A-I      intronic
chr10:98365732(-) A-I      intronic
chr10:98413079(-) A-I      intronic
chr10:98365826(-) A-I      intronic
chr10:98450240(-) A-I      intronic
chr10:98439160(-) A-I      intronic
chr10:98364894(-) A-I      intronic
chr10:98413382(-) A-I      intronic
chr10:98462854(-) A-I      intronic
chr10:98415182(-) A-I      intronic
chr10:98364901(-) A-I      intronic
chr10:98467147(-) A-I      intronic
chr10:98464389(-) A-I      intronic
chr10:98413449(-) A-I      intronic
chr10:98360986(-) A-I      intronic
chr10:98454414(-) A-I      intronic
chr10:98361805(-) A-I      intronic
chr10:98469301(-) A-I      intronic
chr10:98467723(-) A-I      intronic
chr10:98469253(-) A-I      intronic
chr10:98467631(-) A-I      intronic
chr10:98467595(-) A-I      intronic
chr10:98465412(-) A-I      intronic
chr10:98415058(-) A-I      intronic
chr10:98468778(-) A-I      intronic
chr10:98462947(-) A-I      intronic
chr10:98457713(-) A-I      intronic
chr10:98469230(-) A-I      intronic
chr10:98365608(-) A-I      intronic
chr10:98449325(-) A-I      intronic
chr10:98467763(-) A-I      intronic
chr10:98361821(-) A-I      intronic
chr10:98412970(-) A-I      intronic
chr10:98469297(-) A-I      intronic
chr10:98469298(-) A-I      intronic
chr10:98469207(-) A-I      intronic
chr10:98469222(-) A-I      intronic
chr10:98469203(-) A-I      intronic
chr10:98469227(-) A-I      intronic
chr10:98467727(-) A-I      intronic
chr10:98462741(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED PIK3AP1
chr10:98467727(-) A-I intron -    22327324
chr10:98360996(-) A-G intron -    22484847
chr10:98365791(-) A-G intron -    22484847
chr10:98365826(-) A-G intron -    22484847
chr10:98402062(-) T-C intron -    22484847
chr10:98402089(-) T-C intron -    22484847
chr10:98412907(-) A-G intron -    22484847
chr10:98412912(-) A-G intron -    22484847
chr10:98462798(-) A-G intron -    22484847
chr10:98462924(-) A-G intron -    22484847
chr10:98464292(-) A-G intron -    22484847
chr10:98464309(-) A-G intron -    22484847
chr10:98464353(-) A-G intron -    22484847
chr10:98464363(-) A-G intron -    22484847
chr10:98467115(-) A-G intron -    22484847
chr10:98467116(-) A-G intron -    22484847
chr10:98467147(-) A-G intron -    22484847
chr10:98467178(-) A-G intron -    22484847
chr10:98467210(-) A-G intron -    22484847
chr10:98467723(-) A-G intron -    22484847
chr10:98467763(-) A-G intron -    22484847
chr10:98469207(-) A-G intron -    22484847
chr10:98469222(-) A-G intron -    22484847
chr10:98469297(-) A-G intron -    22484847
chr10:98469298(-) A-G intron -    22484847
chr10:98469301(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase PIK3AP1
chr10:98355076-98355077(-) m6A 3'UTR       24981863//27773535
chr10:98355106-98355107(-) m6A 3'UTR       24981863//28052920//27773535
chr10:98355142-98355143(-) m6A 3'UTR       24981863//28052920//27773535
chr10:98355294-98355295(-) m6A 3'UTR       24209618//24981863//28052920//27773535//27371828//22608085
chr10:98355302-98355303(-) m6A 3'UTR       24209618//24981863//28052920//27773535//27371828//22608085
chr10:98355318-98355319(-) m6A 3'UTR       24209618//24981863//28052920//27773535//27371828//22608085
chr10:98355374-98355375(-) m6A CDS//exon       24209618//24981863//27773535//27371828
chr10:98362071-98362072(-) m6A CDS//exon       24209618//27773535//27371828
chr10:98362094-98362095(-) m6A CDS//exon       24209618//27773535
chr10:98363516-98363517(-) m6A exon//intron       27773535
chr10:98363530-98363531(-) m6A exon//intron       27773535
chr10:98363584-98363585(-) m6A exon//intron       27773535
chr10:98369492-98369493(-) m6A CDS//exon       24981863//27773535//27371828
chr10:98369500-98369501(-) m6A CDS//exon       24981863//27773535//27371828
chr10:98376398-98376399(-) m6A CDS//exon       27773535//27371828
chr10:98376429-98376430(-) m6A CDS//exon       27773535//27371828
chr10:98376445-98376446(-) m6A CDS//exon       27773535//27371828
chr10:98378442-98378443(-) m6A exon//intron       27773535
chr10:98405380-98405381(-) m6A CDS//exon       27773535
chr10:98405408-98405409(-) m6A CDS//exon       27773535
chr10:98408443-98408444(-) m6A CDS//exon       27773535
chr10:98408457-98408458(-) m6A CDS//exon       27773535
chr10:98469583-98469584(-) m6A CDS       27371828
chr10:98469668-98469669(-) m6A CDS       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30a-3p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Endothelial cells|Epithelial cells|Tongue tissue     -
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
PIK3AP1
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-30a-3p
Sorafenib 216239 Drug interaction    RC00000903
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30a-3p
Imatinib 5291       25349971

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30a-3p
Interactor2: PIK3AP1

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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