Detail Information

Basic Information:


  VIRBase ID:  

HHID00044894

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30a-3p:           ALS2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30a-3p ALS2
miRBase
Accession/Entrez ID		 MIMAT0000088 57679
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - ALS2CR6//ALSJ//IAHSP//PLSJ

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30a-3p
rs149150037 chr6:71403567    G/A
rs149150037 chr6:71403567    G/C
rs370184894 chr6:71403566    C/A
rs370184894 chr6:71403566    C/T
rs552541514 chr6:71403558    C/G
rs745605208 chr6:71403563    ATCCG/A
rs746505574 chr6:71403557    G/A
rs746505574 chr6:71403557    G/T
rs746965145 chr6:71403554    GCT/G
rs750918072 chr6:71403564    T/C
rs765735953 chr6:71403560    A/T
rs770865356 chr6:71403559    A/AC
rs776574456 chr6:71403560    A/AAGCTGGAGT
rs368070339 chr6:71403571    G/A
rs769702885 chr6:71403570    TG/T
rs775921090 chr6:71403574    AGCC/A
rs781617967 chr6:71403573    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR ALS2
chr2:202641837(-) A-I      intronic
chr2:202607538(-) A-I      intronic
chr2:202607712(-) A-I      intronic
chr2:202641885(-) A-I      intronic
chr2:202607711(-) A-I      intronic
chr2:202586483(-) A-I      intronic
chr2:202578785(-) A-I      intronic
chr2:202607551(-) A-I      intronic
chr2:202641870(-) A-I      intronic
chr2:202641869(-) A-I      intronic
chr2:202641845(-) A-I      intronic
chr2:202639887(-) A-I      intronic
chr2:202639928(-) A-I      intronic
chr2:202639929(-) A-I      intronic
chr2:202639940(-) A-I      intronic
chr2:202641828(-) A-I      intronic
chr2:202641865(-) A-I      intronic
chr2:202641839(-) A-I      intronic
chr2:202607732(-) A-I      intronic
chr2:202586531(-) A-I      intronic
chr2:202586511(-) A-I      intronic
chr2:202585411(-) A-I      intronic
chr2:202578118(-) A-I      intronic
chr2:202578082(-) A-I      intronic
chr2:202578046(-) A-I      intronic
chr2:202578038(-) A-I      intronic
chr2:202630023(-) A-I      intronic
chr2:202619924(-) A-I      intronic
chr2:202607694(-) A-I      intronic
chr2:202615644(-) A-I      intronic
chr2:202608345(-) A-I      intronic
chr2:202607750(-) A-I      intronic
chr2:202607747(-) A-I      intronic
chr2:202582054(-) A-I      intronic
chr2:202609993(-) A-I      intronic
chr2:202619892(-) A-I      intronic
chr2:202582041(-) A-I      intronic
chr2:202619909(-) A-I      intronic
chr2:202612338(-) A-I      intronic
chr2:202631338(-) A-I      intronic
chr2:202610008(-) A-I      intronic
chr2:202586666(-) A-I      intronic
chr2:202619863(-) A-I      intronic
chr2:202619893(-) A-I      intronic
chr2:202578822(-) A-I      intronic
chr2:202585375(-) A-I      intronic
chr2:202586658(-) A-I      intronic
chr2:202624939(-) A-I      3'UTR
chr2:202608471(-) A-I      intronic
chr2:202608268(-) A-I      intronic
chr2:202578833(-) A-I      intronic
chr2:202585350(-) A-I      intronic
chr2:202578063(-) A-I      intronic
chr2:202578128(-) A-I      intronic
chr2:202578045(-) A-I      intronic
chr2:202608470(-) A-I      intronic
chr2:202594347(-) A-I      intronic
chr2:202630039(-) A-I      intronic
chr2:202578784(-) A-I      intronic
chr2:202607603(-) A-I      intronic
chr2:202577984(-) A-I      intronic
chr2:202585368(-) A-I      intronic
chr2:202585423(-) A-I      intronic
chr2:202582025(-) A-I      intronic
chr2:202577997(-) A-I      intronic
chr2:202578788(-) A-I      intronic
chr2:202585329(-) A-I      intronic
chr2:202585175(-) A-I      intronic
chr2:202585309(-) A-I      intronic
chr2:202608388(-) A-I      intronic
chr2:202607647(-) A-I      intronic
chr2:202586665(-) A-I      intronic
chr2:202586659(-) A-I      intronic
chr2:202578077(-) A-I      intronic
chr2:202578117(-) A-I      intronic
chr2:202578820(-) A-I      intronic
chr2:202578112(-) A-I      intronic
chr2:202585385(-) A-I      intronic
chr2:202620123(-) A-I      intronic
chr2:202578760(-) A-I      intronic
chr2:202567582(-) A-I      intronic
chr2:202629859(-) A-I      intronic
chr2:202629098(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED ALS2
chr2:202578045(-) A-G intron -    22484847
chr2:202578117(-) A-G intron -    22484847
chr2:202578128(-) A-G intron -    22484847
chr2:202578787(-) A-G intron -    22484847
chr2:202578788(-) A-G intron -    22484847
chr2:202578820(-) A-G intron -    22484847
chr2:202578822(-) A-G intron -    22484847
chr2:202578833(-) A-G intron -    22484847
chr2:202585175(-) A-G intron -    22484847
chr2:202585385(-) A-G intron -    22484847
chr2:202608268(-) A-G intron -    22484847
chr2:202608388(-) A-G intron -    22484847
chr2:202608393(-) A-G intron -    22484847
chr2:202608470(-) A-G intron -    22484847
chr2:202608471(-) A-G intron -    22484847
chr2:202629903(-) A-G intron -    22484847
chr2:202630039(-) A-G intron -    22484847
chr2:202639946(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase ALS2
chr2:202565355-202565356(-) m6A 3'UTR       27773535
chr2:202565623-202565624(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//22608085
chr2:202565647-202565648(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:202565697-202565698(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:202565723-202565724(-) m6A 3'UTR       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:202565814-202565815(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:202565837-202565838(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:202565900-202565901(-) m6A 3'UTR       22608085
chr2:202565970-202565971(-) m6A 3'UTR       -
chr2:202566025-202566026(-) m6A 3'UTR       -
chr2:202566033-202566034(-) m6A 3'UTR       -
chr2:202566350-202566351(-) m6A 3'UTR       24981863//27773535//22608085
chr2:202566400-202566401(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:202566468-202566469(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:202566489-202566490(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr2:202566553-202566554(-) m6A 3'UTR       24284625//24981863//27773535//22608085
chr2:202580442-202580443(-) m6A 3'UTR//CDS       27773535
chr2:202582814-202582815(-) m6A 3'UTR//CDS//exon       27773535
chr2:202582840-202582841(-) m6A 3'UTR//CDS//exon       27773535
chr2:202582851-202582852(-) m6A 3'UTR//CDS//exon       27773535
chr2:202582907-202582908(-) m6A 3'UTR//CDS//exon       27773535
chr2:202582929-202582930(-) m6A 3'UTR//CDS//exon       27773535
chr2:202590132-202590133(-) m6A CDS//exon       27773535
chr2:202590141-202590142(-) m6A CDS//exon       27773535
chr2:202590153-202590154(-) m6A CDS//exon       27773535
chr2:202591487-202591488(-) m6A CDS//exon       24981863
chr2:202591493-202591494(-) m6A CDS//exon       24981863
chr2:202622230-202622231(-) m6A CDS//exon       27773535
chr2:202622239-202622240(-) m6A CDS//exon       27773535
chr2:202622301-202622302(-) m6A CDS//exon       27773535
chr2:202622327-202622328(-) m6A CDS//exon       27773535
chr2:202622417-202622418(-) m6A CDS//exon       24284625//25456834//24981863//27773535//22608085
chr2:202624252-202624253(-) m6A 3'UTR//intron       25456834//24981863//27773535//27371828//22608085
chr2:202624289-202624290(-) m6A 3'UTR//intron       25456834//27773535
chr2:202624484-202624485(-) Y 3'UTR//intron       26075521
chr2:202624914-202624915(-) m6A 3'UTR//intron       -
chr2:202625536-202625537(-) m6A CDS//intron       24981863//27773535//22608085
chr2:202625559-202625560(-) m6A CDS//intron       24284625//24981863//27773535//22608085
chr2:202625637-202625638(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr2:202625663-202625664(-) m6A CDS//exon       24284625//24981863//27773535//22575960//22608085
chr2:202625712-202625713(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr2:202625737-202625738(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202625804-202625805(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202625841-202625842(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202625872-202625873(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22575960//22608085
chr2:202625907-202625908(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:202625958-202625959(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:202625976-202625977(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22575960//22608085
chr2:202626128-202626129(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//22608085
chr2:202626317-202626318(-) m6A CDS//exon       24284625//24209618//25456834//24981863//26404942//27773535//27371828//22608085
chr2:202626393-202626394(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//22608085
chr2:202626497-202626498(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr2:202626517-202626518(-) m6A CDS//exon       24284625//27773535//22608085
chr2:202631973-202631974(-) m6A CDS//exon       27371828
chr2:202632002-202632003(-) m6A CDS//exon       27371828
chr2:202633603-202633604(-) m6A CDS//exon       27371828
chr2:202633657-202633658(-) m6A 5'UTR//exon       24981863
chr2:202643176-202643177(-) m6A 5'UTR//intron       24981863
chr2:202644793-202644794(-) m6A 5'UTR//intron       27773535
chr2:202645659-202645660(-) m6A 5'UTR//exon       27773535
chr2:202645778-202645779(-) m6A 5'UTR       27773535
chr2:202645866-202645867(-) m6A 5'UTR       27773535
chr2:202645878-202645879(-) m6A 5'UTR       27773535
chr2:202645897-202645898(-) m6A 5'UTR       27773535

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30a-3p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Endothelial cells|Epithelial cells|Tongue tissue     -
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
ALS2
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -
Nucleus Colon cancer cells     24393600
Nucleus HCC cell line (HepG2)|K562 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-30a-3p
Sorafenib 216239 Drug interaction    RC00000903
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30a-3p
Imatinib 5291       25349971

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30a-3p
Interactor2: ALS2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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