Detail Information

Basic Information:


  VIRBase ID:  

HHID00044892

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30a-3p:           BBS7:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30a-3p BBS7
miRBase
Accession/Entrez ID		 MIMAT0000088 55212
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - BBS2L1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30a-3p
rs149150037 chr6:71403567    G/A
rs149150037 chr6:71403567    G/C
rs370184894 chr6:71403566    C/A
rs370184894 chr6:71403566    C/T
rs552541514 chr6:71403558    C/G
rs745605208 chr6:71403563    ATCCG/A
rs746505574 chr6:71403557    G/A
rs746505574 chr6:71403557    G/T
rs746965145 chr6:71403554    GCT/G
rs750918072 chr6:71403564    T/C
rs765735953 chr6:71403560    A/T
rs770865356 chr6:71403559    A/AC
rs776574456 chr6:71403560    A/AAGCTGGAGT
rs368070339 chr6:71403571    G/A
rs769702885 chr6:71403570    TG/T
rs775921090 chr6:71403574    AGCC/A
rs781617967 chr6:71403573    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR BBS7
chr4:122759137(-) A-I      intronic
chr4:122750486(-) A-I      intronic
chr4:122779116(-) A-I      intronic
chr4:122779126(-) A-I      intronic
chr4:122770607(-) A-I      intronic
chr4:122770570(-) A-I      intronic
chr4:122770553(-) A-I      intronic
chr4:122770453(-) A-I      intronic
chr4:122759147(-) A-I      intronic
chr4:122763607(-) A-I      intronic
chr4:122762246(-) A-I      intronic
chr4:122762241(-) A-I      intronic
chr4:122762053(-) A-I      intronic
chr4:122753374(-) A-I      intronic
chr4:122759974(-) A-I      intronic
chr4:122759215(-) A-I      intronic
chr4:122778021(-) A-I      intronic
chr4:122771436(-) A-I      intronic
chr4:122771422(-) A-I      intronic
chr4:122777646(-) A-I      intronic
chr4:122777653(-) A-I      intronic
chr4:122779064(-) A-I      intronic
chr4:122779086(-) A-I      intronic
chr4:122779099(-) A-I      intronic
chr4:122779106(-) A-I      intronic
chr4:122779110(-) A-I      intronic
chr4:122770739(-) A-I      intronic
chr4:122759981(-) A-I      intronic
chr4:122752128(-) A-I      intronic
chr4:122778080(-) A-I      intronic
chr4:122750626(-) A-I      intronic
chr4:122776271(-) A-I      intronic
chr4:122777863(-) A-I      intronic
chr4:122770725(-) A-I      intronic
chr4:122763572(-) A-I      intronic
chr4:122770472(-) A-I      intronic
chr4:122777959(-) A-I      intronic
chr4:122762125(-) A-I      intronic
chr4:122752222(-) A-I      intronic
chr4:122777687(-) A-I      intronic
chr4:122762465(-) A-I      intronic
chr4:122770941(-) A-I      intronic
chr4:122750606(-) A-I      intronic
chr4:122751432(-) A-I      intronic
chr4:122750686(-) A-I      intronic
chr4:122762131(-) A-I      intronic
chr4:122758279(-) A-I      intronic
chr4:122753446(-) A-I      intronic
chr4:122750565(-) A-I      intronic
chr4:122770529(-) A-I      intronic
chr4:122763659(-) A-I      intronic
chr4:122770500(-) A-I      intronic
chr4:122763533(-) A-I      intronic
chr4:122778352(-) A-I      intronic
chr4:122778549(-) A-I      intronic
chr4:122750423(-) A-I      intronic
chr4:122751550(-) A-I      intronic
chr4:122751464(-) A-I      intronic
chr4:122752593(-) A-I      intronic
chr4:122752539(-) A-I      intronic
chr4:122762274(-) A-I      intronic
chr4:122776302(-) A-I      intronic
chr4:122752617(-) A-I      intronic
chr4:122762222(-) A-I      intronic
chr4:122752248(-) A-I      intronic
chr4:122751480(-) A-I      intronic
chr4:122751473(-) A-I      intronic
chr4:122752297(-) A-I      intronic
chr4:122777784(-) A-I      intronic
chr4:122777755(-) A-I      intronic
chr4:122770727(-) A-I      intronic
chr4:122751444(-) A-I      intronic
chr4:122778151(-) A-I      intronic
chr4:122778995(-) A-I      intronic
chr4:122777615(-) A-I      intronic
chr4:122778497(-) A-I      intronic
chr4:122753276(-) A-I      intronic
chr4:122770976(-) A-I      intronic
chr4:122770448(-) A-I      intronic
chr4:122750544(-) A-I      intronic
chr4:122770980(-) A-I      intronic
chr4:122751312(-) A-I      intronic
chr4:122762501(-) A-I      intronic
chr4:122762598(-) A-I      intronic
chr4:122751360(-) A-I      intronic
chr4:122762453(-) A-I      intronic
chr4:122751456(-) A-I      intronic
chr4:122770922(-) A-I      intronic
chr4:122770861(-) A-I      intronic
chr4:122777963(-) A-I      intronic
chr4:122777665(-) A-I      intronic
chr4:122778014(-) A-I      intronic
chr4:122751377(-) A-I      intronic
chr4:122778062(-) A-I      intronic
chr4:122770825(-) A-I      intronic
chr4:122778473(-) A-I      intronic
chr4:122778492(-) A-I      intronic
chr4:122777781(-) A-I      intronic
chr4:122763790(-) A-I      intronic
chr4:122777780(-) A-I      intronic
chr4:122762604(-) A-I      intronic
chr4:122750554(-) A-I      intronic
chr4:122778088(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED BBS7
chr4:122751418(-) A-G intron -    22484847
chr4:122770448(-) A-G intron -    22484847
chr4:122770725(-) A-G intron -    22484847
chr4:122770928(-) A-G intron -    22484847
chr4:122770976(-) A-G intron -    22484847
chr4:122777665(-) A-G intron -    22484847
chr4:122777666(-) A-G intron -    22484847
chr4:122777810(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase BBS7
chr4:122745712-122745713(-) Y 3'UTR       26075521
chr4:122748984-122748985(-) m6A 3'UTR//intron       27773535
chr4:122748999-122749000(-) m6A 3'UTR//intron       27773535
chr4:122749032-122749033(-) m6A 3'UTR//intron       27773535
chr4:122749291-122749292(-) m6A 3'UTR//intron       27773535//22608085
chr4:122749307-122749308(-) m6A CDS       27773535//22608085
chr4:122749395-122749396(-) m6A CDS       27773535//22608085
chr4:122756335-122756336(-) Y CDS       26075521
chr4:122775901-122775902(-) m6A CDS       27773535
chr4:122775931-122775932(-) m6A CDS       27773535
chr4:122775945-122775946(-) m6A CDS       27773535
chr4:122775959-122775960(-) m6A CDS       27773535
chr4:122782789-122782790(-) m6A CDS//exon       -
chr4:122782821-122782822(-) m6A CDS//exon       -
chr4:122789153-122789154(-) m6A CDS//exon       -
chr4:122791601-122791602(-) m6A 5'UTR//exon       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30a-3p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Endothelial cells|Epithelial cells|Tongue tissue     -
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
BBS7
Chromatin K562 cells     -
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells     -
Ribosome HEK-293 cells     22199352

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-30a-3p
Sorafenib 216239 Drug interaction    RC00000903
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30a-3p
Imatinib 5291       25349971

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30a-3p
Interactor2: BBS7

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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