Detail Information

Basic Information:


  VIRBase ID:  

HHID00044890

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30a-3p:           CAMSAP2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30a-3p CAMSAP2
miRBase
Accession/Entrez ID
MIMAT0000088 23271
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CAMSAP1L1

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30a-3p
rs149150037 chr6:71403567    G/A
rs149150037 chr6:71403567    G/C
rs370184894 chr6:71403566    C/A
rs370184894 chr6:71403566    C/T
rs552541514 chr6:71403558    C/G
rs745605208 chr6:71403563    ATCCG/A
rs746505574 chr6:71403557    G/A
rs746505574 chr6:71403557    G/T
rs746965145 chr6:71403554    GCT/G
rs750918072 chr6:71403564    T/C
rs765735953 chr6:71403560    A/T
rs770865356 chr6:71403559    A/AC
rs776574456 chr6:71403560    A/AAGCTGGAGT
rs368070339 chr6:71403571    G/A
rs769702885 chr6:71403570    TG/T
rs775921090 chr6:71403574    AGCC/A
rs781617967 chr6:71403573    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CAMSAP2
chr1:200785611(+) A-I      intronic
chr1:200785601(+) A-I      intronic
chr1:200785561(+) A-I      intronic
chr1:200785579(+) A-I      intronic
chr1:200744588(+) A-I      intronic
chr1:200785568(+) A-I      intronic
chr1:200732208(+) A-I      intronic
chr1:200785570(+) A-I      intronic
chr1:200785560(+) A-I      intronic
chr1:200732132(+) A-I      intronic
chr1:200732167(+) A-I      intronic
chr1:200732193(+) A-I      intronic
chr1:200732211(+) A-I      intronic
chr1:200785542(+) A-I      intronic
chr1:200744618(+) A-I      intronic
chr1:200785543(+) A-I      intronic
chr1:200785569(+) A-I      intronic
chr1:200744620(+) A-I      intronic
chr1:200785559(+) A-I      intronic
chr1:200810487(+) A-I      intronic
chr1:200744585(+) A-I      intronic
chr1:200744628(+) A-I      intronic
chr1:200785567(+) A-I      intronic
chr1:200734417(+) A-I      intronic
chr1:200810596(+) A-I      intronic
chr1:200736311(+) A-I      intronic
chr1:200739825(+) A-I      intronic
chr1:200810540(+) A-I      intronic
chr1:200739816(+) A-I      intronic
chr1:200734604(+) A-I      intronic
chr1:200810508(+) A-I      intronic
chr1:200732491(+) A-I      intronic
chr1:200734076(+) A-I      intronic
chr1:200741560(+) A-I      intronic
chr1:200734072(+) A-I      intronic
chr1:200810393(+) A-I      intronic
chr1:200735488(+) A-I      intronic
chr1:200809531(+) A-I      intronic
chr1:200739749(+) A-I      intronic
chr1:200809527(+) A-I      intronic
chr1:200736197(+) A-I      intronic
chr1:200809430(+) A-I      intronic
chr1:200803360(+) A-I      intronic
chr1:200732502(+) A-I      intronic
chr1:200798908(+) A-I      intronic
chr1:200736249(+) A-I      intronic
chr1:200732302(+) A-I      intronic
chr1:200712873(+) A-I      intronic
chr1:200736440(+) A-I      intronic
chr1:200734050(+) A-I      intronic
chr1:200732102(+) A-I      intronic
chr1:200739764(+) A-I      intronic
chr1:200732608(+) A-I      intronic
chr1:200742637(+) A-I      intronic
chr1:200732588(+) A-I      intronic
chr1:200744757(+) A-I      intronic
chr1:200732552(+) A-I      intronic
chr1:200794776(+) A-I      intronic
chr1:200723791(+) A-I      intronic
chr1:200736258(+) A-I      intronic
chr1:200723785(+) A-I      intronic
chr1:200732524(+) A-I      intronic
chr1:200736273(+) A-I      intronic
chr1:200732489(+) A-I      intronic
chr1:200794774(+) A-I      intronic
chr1:200794761(+) A-I      intronic
chr1:200785671(+) A-I      intronic
chr1:200785663(+) A-I      intronic
chr1:200722371(+) A-I      intronic
chr1:200722236(+) A-I      intronic
chr1:200721874(+) A-I      intronic
chr1:200782998(+) A-I      intronic
chr1:200721870(+) A-I      intronic
chr1:200721826(+) A-I      intronic
chr1:200777103(+) A-I      intronic
chr1:200712949(+) A-I      intronic
chr1:200757911(+) A-I      intronic
chr1:200751950(+) A-I      intronic
chr1:200712908(+) A-I      intronic
chr1:200745834(+) A-I      intronic
chr1:200744787(+) A-I      intronic
chr1:200721839(+) A-I      intronic
chr1:200712882(+) A-I      intronic
chr1:200739804(+) A-I      intronic
chr1:200813251(+) A-I      intronic
chr1:200741658(+) A-I      intronic
chr1:200813431(+) A-I      intronic
chr1:200813439(+) A-I      intronic
chr1:200736450(+) A-I      intronic
chr1:200813517(+) A-I      intronic
chr1:200736308(+) A-I      intronic
chr1:200741595(+) A-I      intronic
chr1:200742647(+) A-I      intronic
chr1:200777069(+) A-I      intronic
chr1:200734544(+) A-I      intronic
chr1:200734500(+) A-I      intronic
chr1:200736455(+) A-I      intronic
chr1:200777117(+) A-I      intronic
chr1:200744758(+) A-I      intronic
chr1:200741576(+) A-I      intronic
chr1:200732520(+) A-I      intronic
chr1:200734085(+) A-I      intronic
chr1:200777049(+) A-I      intronic
chr1:200716216(+) A-I      intronic
chr1:200716301(+) A-I      intronic
chr1:200714835(+) A-I      intronic
chr1:200795404(+) A-I      intronic
chr1:200794699(+) A-I      intronic
chr1:200745732(+) A-I      intronic
chr1:200813221(+) A-I      intronic
chr1:200716288(+) A-I      intronic
chr1:200813141(+) A-I      intronic
chr1:200734461(+) A-I      intronic
chr1:200741473(+) A-I      intronic
chr1:200732225(+) A-I      intronic
chr1:200722332(+) A-I      intronic
chr1:200742521(+) A-I      intronic
chr1:200741528(+) A-I      intronic
chr1:200728452(+) A-I      intronic
chr1:200744933(+) A-I      intronic
chr1:200741479(+) A-I      intronic
chr1:200752750(+) A-I      intronic
chr1:200734147(+) A-I      intronic
chr1:200736195(+) A-I      intronic
chr1:200722358(+) A-I      intronic
chr1:200802574(+) A-I      intronic
chr1:200725454(+) A-I      intronic
chr1:200723917(+) A-I      intronic
chr1:200789318(+) A-I      intronic
chr1:200732533(+) A-I      intronic
chr1:200794654(+) A-I      intronic
chr1:200813206(+) A-I      intronic
chr1:200752159(+) A-I      intronic
chr1:200776888(+) A-I      intronic
chr1:200776969(+) A-I      intronic
chr1:200793947(+) A-I      intronic
chr1:200813621(+) A-I      intronic
chr1:200736309(+) A-I      intronic
chr1:200735371(+) A-I      intronic
chr1:200794816(+) A-I      intronic
chr1:200742590(+) A-I      intronic
chr1:200721952(+) A-I      intronic
chr1:200795304(+) A-I      intronic
chr1:200734458(+) A-I      intronic
chr1:200716237(+) A-I      intronic
chr1:200728586(+) A-I      intronic
chr1:200793986(+) A-I      intronic
chr1:200744619(+) A-I      intronic
chr1:200732162(+) A-I      intronic
chr1:200734181(+) A-I      intronic
chr1:200783575(+) A-I      intronic
chr1:200813273(+) A-I      intronic
chr1:200783169(+) A-I      intronic
chr1:200732602(+) A-I      intronic
chr1:200757814(+) A-I      intronic
chr1:200721820(+) A-I      intronic
chr1:200803230(+) A-I      intronic
chr1:200722240(+) A-I      intronic
chr1:200793951(+) A-I      intronic
chr1:200725326(+) A-I      intronic
chr1:200745772(+) A-I      intronic
chr1:200734559(+) A-I      intronic
chr1:200755641(+) A-I      intronic
chr1:200734078(+) A-I      intronic
chr1:200823348(+) A-I      intronic
chr1:200725601(+) A-I      intronic
chr1:200744623(+) A-I      intronic
chr1:200734182(+) A-I      intronic
chr1:200714834(+) A-I      intronic
chr1:200752083(+) A-I      intronic
chr1:200734422(+) A-I      intronic
chr1:200728532(+) A-I      intronic
chr1:200794082(+) A-I      intronic
chr1:200811928(+) A-I      intronic
chr1:200722168(+) A-I      intronic
chr1:200794735(+) A-I      intronic
chr1:200732180(+) A-I      intronic
chr1:200795413(+) A-I      intronic
chr1:200783044(+) A-I      intronic
chr1:200802578(+) A-I      intronic
chr1:200721789(+) A-I      intronic
chr1:200733055(+) A-I      intronic
chr1:200741616(+) A-I      intronic
chr1:200742524(+) A-I      intronic
chr1:200779583(+) A-I      intronic
chr1:200732556(+) A-I      intronic
chr1:200752040(+) A-I      intronic
chr1:200728607(+) A-I      intronic
chr1:200803364(+) A-I      intronic
chr1:200735336(+) A-I      intronic
chr1:200734533(+) A-I      intronic
chr1:200742568(+) A-I      intronic
chr1:200734121(+) A-I      intronic
chr1:200736316(+) A-I      intronic
chr1:200732157(+) A-I      intronic
chr1:200734427(+) A-I      intronic
chr1:200783180(+) A-I      intronic
chr1:200734542(+) A-I      intronic
chr1:200713059(+) A-I      intronic
chr1:200795492(+) A-I      intronic
chr1:200733151(+) A-I      intronic
chr1:200735421(+) A-I      intronic
chr1:200783130(+) A-I      intronic
chr1:200722237(+) A-I      intronic
chr1:200761756(+) A-I      intronic
chr1:200780004(+) A-I      intronic
chr1:200732398(+) A-I      intronic
chr1:200778712(+) A-I      intronic
chr1:200734452(+) A-I      intronic
chr1:200744689(+) A-I      intronic
chr1:200741475(+) A-I      intronic
chr1:200732612(+) A-I      intronic
chr1:200721862(+) A-I      intronic
chr1:200813524(+) A-I      intronic
chr1:200732108(+) A-I      intronic
chr1:200802108(+) A-I      intronic
chr1:200789354(+) A-I      intronic
chr1:200745767(+) A-I      intronic
chr1:200813490(+) A-I      intronic
chr1:200742475(+) A-I      intronic
chr1:200803860(+) A-I      intronic
chr1:200732154(+) A-I      intronic
chr1:200776891(+) A-I      intronic
chr1:200732189(+) A-I      intronic
chr1:200721832(+) A-I      intronic
chr1:200813422(+) A-I      intronic
chr1:200776949(+) A-I      intronic
chr1:200732131(+) A-I      intronic
chr1:200732127(+) A-I      intronic
chr1:200732128(+) A-I      intronic
chr1:200752027(+) A-I      intronic
chr1:200728500(+) A-I      intronic
chr1:200776994(+) A-I      intronic
chr1:200722007(+) A-I      intronic
chr1:200736411(+) A-I      intronic
chr1:200734556(+) A-I      intronic
chr1:200734539(+) A-I      intronic
chr1:200745733(+) A-I      intronic
chr1:200734524(+) A-I      intronic
chr1:200721815(+) A-I      intronic
chr1:200728552(+) A-I      intronic
chr1:200732263(+) A-I      intronic
chr1:200789372(+) A-I      intronic
chr1:200813139(+) A-I      intronic
chr1:200778658(+) A-I      intronic
chr1:200779982(+) A-I      intronic
chr1:200752014(+) A-I      intronic
chr1:200776930(+) A-I      intronic
chr1:200783617(+) A-I      intronic
chr1:200732104(+) A-I      intronic
chr1:200734189(+) A-I      intronic
chr1:200793849(+) A-I      intronic
chr1:200734568(+) A-I      intronic
chr1:200732153(+) A-I      intronic
chr1:200736402(+) A-I      intronic
chr1:200793960(+) A-I      intronic
chr1:200737987(+) A-I      intronic
chr1:200742893(+) A-I      intronic
chr1:200780000(+) A-I      intronic
chr1:200722247(+) A-I      intronic
chr1:200783039(+) A-I      intronic
chr1:200813529(+) A-I      intronic
chr1:200722328(+) A-I      intronic
chr1:200739727(+) A-I      intronic
chr1:200813423(+) A-I      intronic
chr1:200741572(+) A-I      intronic
chr1:200803809(+) A-I      intronic
chr1:200742481(+) A-I      intronic
chr1:200740827(+) A-I      intronic
chr1:200813489(+) A-I      intronic
chr1:200734419(+) A-I      intronic
chr1:200735468(+) A-I      intronic
chr1:200761714(+) A-I      intronic
chr1:200776973(+) A-I      intronic
chr1:200742894(+) A-I      intronic
chr1:200739741(+) A-I      intronic
chr1:200779565(+) A-I      intronic
chr1:200811948(+) A-I      intronic
chr1:200752063(+) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CAMSAP2
chr1:200734121(+) A-I intron -    22327324
chr1:200721789(+) A-G intron -    22484847
chr1:200721815(+) A-G intron -    22484847
chr1:200721820(+) A-G intron -    22484847
chr1:200721832(+) A-G intron -    22484847
chr1:200721862(+) A-G intron -    22484847
chr1:200722240(+) A-G intron -    22484847
chr1:200722328(+) A-G intron -    22484847
chr1:200722358(+) A-G intron -    22484847
chr1:200725418(+) G-T intron -    22484847
chr1:200725592(+) G-A intron -    22484847
chr1:200728452(+) A-G intron -    22484847
chr1:200732104(+) A-G intron -    22484847
chr1:200732127(+) A-G intron -    22484847
chr1:200732128(+) A-G intron -    22484847
chr1:200732153(+) A-G intron -    22484847
chr1:200732154(+) A-G intron -    22484847
chr1:200732157(+) A-G intron -    22484847
chr1:200732162(+) A-G intron -    22484847
chr1:200732189(+) A-G intron -    22484847
chr1:200732225(+) A-G intron -    22484847
chr1:200732263(+) A-G intron -    22484847
chr1:200732505(+) G-A intron -    22484847
chr1:200732520(+) A-G intron -    22484847
chr1:200732533(+) A-G intron -    22484847
chr1:200732556(+) A-G intron -    22484847
chr1:200733055(+) A-G intron -    22484847
chr1:200734078(+) A-G intron -    22484847
chr1:200734085(+) A-G intron -    22484847
chr1:200734121(+) A-G intron -    22484847
chr1:200734419(+) A-G intron -    22484847
chr1:200734422(+) A-G intron -    22484847
chr1:200734427(+) A-G intron -    22484847
chr1:200734458(+) A-G intron -    22484847
chr1:200734461(+) A-G intron -    22484847
chr1:200734524(+) A-G intron -    22484847
chr1:200734533(+) A-G intron -    22484847
chr1:200734539(+) A-G intron -    22484847
chr1:200734542(+) A-G intron -    22484847
chr1:200734556(+) A-G intron -    22484847
chr1:200734559(+) A-G intron -    22484847
chr1:200734568(+) A-G intron -    22484847
chr1:200735371(+) A-G intron -    22484847
chr1:200735421(+) A-G intron -    22484847
chr1:200735468(+) A-G intron -    22484847
chr1:200736195(+) A-G intron -    22484847
chr1:200736309(+) A-G intron -    22484847
chr1:200736316(+) A-G intron -    22484847
chr1:200737987(+) A-G intron -    22484847
chr1:200741473(+) A-G intron -    22484847
chr1:200741475(+) A-G intron -    22484847
chr1:200741479(+) A-G intron -    22484847
chr1:200741528(+) A-G intron -    22484847
chr1:200742475(+) A-G intron -    22484847
chr1:200742481(+) A-G intron -    22484847
chr1:200742521(+) A-G intron -    22484847
chr1:200742524(+) A-G intron -    22484847
chr1:200742568(+) A-G intron -    22484847
chr1:200745732(+) A-G intron -    22484847
chr1:200745733(+) A-G intron -    22484847
chr1:200745772(+) A-G intron -    22484847
chr1:200752063(+) A-G intron -    22484847
chr1:200754516(+) C-T intron -    22484847
chr1:200757814(+) A-G intron -    22484847
chr1:200776930(+) A-G intron -    22484847
chr1:200776994(+) A-G intron -    22484847
chr1:200777049(+) A-G intron -    22484847
chr1:200783130(+) A-G intron -    22484847
chr1:200794654(+) A-G intron -    22484847
chr1:200794699(+) A-G intron -    22484847
chr1:200794735(+) A-G intron -    22484847
chr1:200794816(+) A-G intron -    22484847
chr1:200795492(+) A-G intron -    22484847
chr1:200803230(+) A-G intron -    22484847
chr1:200803364(+) A-G intron -    22484847
chr1:200813139(+) A-G intron -    22484847
chr1:200813141(+) A-G intron -    22484847
chr1:200813206(+) A-G intron -    22484847
chr1:200813221(+) A-G intron -    22484847
chr1:200813273(+) A-G intron -    22484847
chr1:200813489(+) A-G intron -    22484847
chr1:200813490(+) A-G intron -    22484847
chr1:200813524(+) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CAMSAP2
chr1:200708694-200708695(+) m6A 5'UTR       24209618//24981863
chr1:200708802-200708803(+) m6A 5'UTR       24209618//24981863
chr1:200708837-200708838(+) m6A 5'UTR       24284625//24209618//24981863
chr1:200708930-200708931(+) m6A 5'UTR       24284625//24209618//25456834//24981863//22608085
chr1:200708971-200708972(+) m6A CDS       24284625//24209618//25456834//24981863//22608085
chr1:200709090-200709091(+) m6A CDS       24981863//22608085
chr1:200729982-200729983(+) m6A CDS       22608085
chr1:200729991-200729992(+) m6A CDS       22608085
chr1:200730002-200730003(+) Cm CDS       -
chr1:200730021-200730022(+) m6A CDS       22608085
chr1:200730030-200730031(+) m6A CDS       22608085
chr1:200730063-200730064(+) m6A CDS       22608085
chr1:200817230-200817231(+) m6A CDS//intron       24284625//24981863//27773535//22608085
chr1:200817264-200817265(+) m6A CDS//intron       24284625//24981863//27773535//22608085
chr1:200817275-200817276(+) m6A CDS//intron       24284625//24981863//22608085
chr1:200817294-200817295(+) m6A CDS//intron       24284625//24981863//22608085
chr1:200817363-200817364(+) m6A CDS//intron       24284625//24981863//26404942//22608085
chr1:200817420-200817421(+) m6A CDS//intron       24284625//24981863//26404942//22608085
chr1:200817511-200817512(+) m6A CDS//intron       24284625//24981863//26404942//22608085
chr1:200817581-200817582(+) m6A CDS//intron       24284625//24981863//22608085
chr1:200817722-200817723(+) m6A CDS//intron       24284625//24981863//26404942//22575960//22608085
chr1:200817760-200817761(+) m6A CDS//intron       24284625//24981863//26404942//22575960//22608085
chr1:200817806-200817807(+) m6A CDS//intron       24284625//24981863//26404942//22575960//22608085
chr1:200817856-200817857(+) m6A CDS//intron       24284625//25456834//24981863//26404942//22575960//22608085
chr1:200817969-200817970(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200817984-200817985(+) m6A CDS//intron       24284625//24209618//24981863//22608085
chr1:200818030-200818031(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200818050-200818051(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200818096-200818097(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200818118-200818119(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200818164-200818165(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200818227-200818228(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:200818233-200818234(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:200818249-200818250(+) m6A CDS//intron       24284625//24209618//24981863//27773535//22575960//22608085
chr1:200818372-200818373(+) m6A CDS//intron       24284625//24981863//27773535//22575960//22608085
chr1:200818380-200818381(+) m6A CDS//intron       24284625//24981863//27773535//22575960//22608085
chr1:200818484-200818485(+) m6A CDS//intron       24981863//26404942//22575960//22608085
chr1:200818507-200818508(+) m6A CDS//intron       24981863//26404942//22575960//22608085
chr1:200818680-200818681(+) m6A CDS//intron       24284625//24981863//22608085
chr1:200818748-200818749(+) m6A CDS//intron       24284625//24981863//22608085
chr1:200818825-200818826(+) m6A CDS//intron       24284625//24981863//26404942//22608085
chr1:200818867-200818868(+) m6A CDS//intron       24284625//24981863//26404942//22608085
chr1:200818942-200818943(+) m6A CDS//intron       24284625//24981863//22575960//22608085
chr1:200818977-200818978(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:200818998-200818999(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:200819041-200819042(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:200819049-200819050(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:200819058-200819059(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:200819085-200819086(+) m6A CDS//intron       24284625//24209618//25456834//24981863//27773535//22575960//22608085
chr1:200819134-200819135(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//27773535//22575960//22608085
chr1:200819159-200819160(+) m6A CDS//intron       24284625//24209618//25456834//24981863//26404942//22575960//22608085
chr1:200819181-200819182(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200819193-200819194(+) m6A CDS//intron       24284625//24209618//24981863//22575960//22608085
chr1:200819259-200819260(+) m6A CDS//intron       24284625//24981863//22575960//22608085
chr1:200819316-200819317(+) m6A CDS//intron       24981863//22608085
chr1:200821746-200821747(+) m6A 3'UTR//CDS       24981863//27773535//22575960//22608085
chr1:200821760-200821761(+) m6A 3'UTR//CDS       24981863//27773535//22575960//22608085
chr1:200821800-200821801(+) m6A 3'UTR//CDS       24981863//27773535//22575960//22608085
chr1:200822409-200822410(+) m6A 3'UTR//CDS       24981863//27773535//22575960//22608085
chr1:200822434-200822435(+) Am 3'UTR//CDS       -
chr1:200822486-200822487(+) m6A 3'UTR//CDS       24981863//27773535//22575960//22608085
chr1:200822495-200822496(+) m6A 3'UTR//CDS       24981863//27773535//22575960//22608085
chr1:200822525-200822526(+) m6A 3'UTR//CDS       24981863//27773535//22575960//22608085
chr1:200822546-200822547(+) m6A CDS       24981863//22608085
chr1:200822555-200822556(+) m6A CDS       24981863//22608085
chr1:200822601-200822602(+) m6A CDS       24981863
chr1:200823971-200823972(+) m6A CDS       24981863
chr1:200825199-200825200(+) m6A CDS       24981863
chr1:200825240-200825241(+) m6A CDS       24981863
chr1:200826586-200826587(+) m6A 3'UTR//intron       24284625//22608085
chr1:200826636-200826637(+) m6A 3'UTR//intron       24284625//22608085
chr1:200826814-200826815(+) m6A 3'UTR//intron       24284625//22608085
chr1:200826971-200826972(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr1:200826988-200826989(+) m6A CDS       24284625//24209618//24981863//27773535//22575960//22608085
chr1:200827036-200827037(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:200827063-200827064(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:200827088-200827089(+) m6A CDS       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:200827139-200827140(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr1:200827147-200827148(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr1:200827165-200827166(+) m6A CDS       24284625//24209618//24981863//26404942//22575960//22608085
chr1:200827211-200827212(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:200827276-200827277(+) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535//22575960//22608085
chr1:200827292-200827293(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085
chr1:200827297-200827298(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22575960//22608085
chr1:200827319-200827320(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr1:200827334-200827335(+) m6A 3'UTR       24284625//24209618//24981863//26404942//22608085
chr1:200827357-200827358(+) m6A 3'UTR       24284625//24981863//22608085

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30a-3p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Endothelial cells|Epithelial cells|Tongue tissue     -
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
CAMSAP2
Chromatin K562 cells     -
Exosome Blood     -
Nucleoplasm K562 cells     -
Nucleus HeLa-S3 cells     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID
Function Link  
RNAInter hsa-miR-30a-3p
Sorafenib 216239 Drug interaction    RC00000903
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30a-3p

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30a-3p
Interactor2: CAMSAP2

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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