Detail Information

Basic Information:


  VIRBase ID:  

HHID00044885

  Virus:  

Human gammaherpesvirus 4 (Epstein-Barr virus, EPV)

  Host:  

Homo sapiens

  Confidence Score:  

0.4752

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-30a-3p:           B4GALT6:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-30a-3p B4GALT6
miRBase
Accession/Entrez ID		 MIMAT0000088 9331
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - B4Gal-T6//beta4Gal-T6

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-30a-3p
rs149150037 chr6:71403567    G/A
rs149150037 chr6:71403567    G/C
rs370184894 chr6:71403566    C/A
rs370184894 chr6:71403566    C/T
rs552541514 chr6:71403558    C/G
rs745605208 chr6:71403563    ATCCG/A
rs746505574 chr6:71403557    G/A
rs746505574 chr6:71403557    G/T
rs746965145 chr6:71403554    GCT/G
rs750918072 chr6:71403564    T/C
rs765735953 chr6:71403560    A/T
rs770865356 chr6:71403559    A/AC
rs776574456 chr6:71403560    A/AAGCTGGAGT
rs368070339 chr6:71403571    G/A
rs769702885 chr6:71403570    TG/T
rs775921090 chr6:71403574    AGCC/A
rs781617967 chr6:71403573    A/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR B4GALT6
chr18:29248720(-) A-I      intronic
chr18:29248852(-) A-I      intronic
chr18:29223444(-) A-I      intronic
chr18:29215779(-) A-I      intronic
chr18:29218234(-) A-I      intronic
chr18:29250276(-) A-I      intronic
chr18:29215729(-) A-I      intronic
chr18:29250197(-) A-I      intronic
chr18:29247890(-) A-I      intronic
chr18:29218484(-) A-I      intronic
chr18:29250165(-) A-I      intronic
chr18:29218414(-) A-I      intronic
chr18:29218378(-) A-I      intronic
chr18:29218368(-) A-I      intronic
chr18:29218362(-) A-I      intronic
chr18:29218317(-) A-I      intronic
chr18:29218265(-) A-I      intronic
chr18:29239946(-) A-I      intronic
chr18:29245642(-) A-I      intronic
chr18:29250145(-) A-I      intronic
chr18:29250196(-) A-I      intronic
chr18:29250195(-) A-I      intronic
chr18:29211220(-) A-I      intronic
chr18:29247901(-) A-I      intronic
chr18:29248911(-) A-I      intronic
chr18:29247960(-) A-I      intronic
chr18:29248891(-) A-I      intronic
chr18:29216988(-) A-I      intronic
chr18:29248718(-) A-I      intronic
chr18:29216853(-) A-I      intronic
chr18:29215737(-) A-I      intronic
chr18:29245629(-) A-I      intronic
chr18:29247895(-) A-I      intronic
chr18:29250171(-) A-I      intronic
chr18:29218240(-) A-I      intronic
chr18:29218246(-) A-I      intronic
chr18:29218323(-) A-I      intronic
chr18:29250095(-) A-I      intronic
chr18:29245618(-) A-I      intronic
chr18:29223541(-) A-I      intronic
chr18:29218301(-) A-I      intronic
chr18:29216861(-) A-I      intronic
chr18:29233666(-) A-I      intronic
chr18:29247938(-) A-I      intronic
chr18:29216904(-) A-I      intronic
chr18:29250191(-) A-I      intronic
chr18:29216921(-) A-I      intronic
chr18:29211210(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED B4GALT6
chr18:29250191(-) A-G intron -    22484847
chr18:29250195(-) A-G intron -    22484847
chr18:29250196(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase B4GALT6
chr18:29204940-29204941(-) m6A 3'UTR//exon       24981863//22608085
chr18:29205003-29205004(-) m6A 3'UTR//exon       24981863//22608085
chr18:29205029-29205030(-) m6A 3'UTR//exon       24981863//22608085
chr18:29205063-29205064(-) m6A 3'UTR//exon       24981863//22608085
chr18:29205094-29205095(-) m6A 3'UTR//exon       24981863//22608085
chr18:29205117-29205118(-) m6A 3'UTR//exon       22608085
chr18:29205141-29205142(-) m6A 3'UTR//exon       22608085
chr18:29205387-29205388(-) m6A 3'UTR//exon       24284625//24981863//22608085
chr18:29205432-29205433(-) m6A 3'UTR//exon       24284625//24981863//27773535//22608085
chr18:29205529-29205530(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr18:29205549-29205550(-) m6A 3'UTR//exon       24284625//24209618//24981863//28052920//27371828//22608085
chr18:29205583-29205584(-) m6A CDS//exon       24284625//24209618//24981863//28052920//22608085
chr18:29205613-29205614(-) m6A CDS//exon       24284625//24209618//24981863//28052920//22608085
chr18:29205625-29205626(-) m6A CDS//exon       24284625//24981863//28052920//22608085
chr18:29205673-29205674(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr18:29205678-29205679(-) m6A CDS//exon       24284625//24209618//24981863//27773535//22608085
chr18:29206305-29206306(-) m6A CDS//exon       24284625//24981863//22608085
chr18:29206316-29206317(-) m6A CDS//exon       24284625//24981863//22608085
chr18:29264500-29264501(-) m6A 5'UTR//intron       25456834

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-30a-3p
Exosome Brain tissue     23382797
Exosome Plasma     23663360
Exosome Breast milk|Endothelial cells|Epithelial cells|Tongue tissue     -
Microvesicle Seminal plasma     23539611
Microvesicle Follicular fluid     23666971
Microvesicle Serum     24797360
Microvesicle Fibroblasts|Mesenchymal stem cells|Urine     -
Mitochondrion Skeletal muscle myoblasts     21637849
Mitochondrion Cell line (HEK-293|HeLa)     22984580
B4GALT6
Cytosol HCC cell line (HepG2)     -
Exosome Blood     -

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-30a-3p
Sorafenib 216239 Drug interaction    RC00000903
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-30a-3p
Imatinib 5291       25349971

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-30a-3p
Interactor2: B4GALT6

Evidence Support:


Weak-Evidence PAR-CLIP
Support Database ViRBase

References:


PMID 22291592 Target region 3'UTR
Source ViRBase Interactor1 expression None
Tissue or cell line EF3D-AGO2 cells//LCL35 cells//LCL-BAC cells//LCL-BAC-D1 cells//LCL-BAC-D3 cells Interactor2 expression None
Description We identified 7, 827 miRNA-interaction sites in 3, 492 cellular 3'UTRs. 531 of these sites contained seed matches to viral miRNAs.Table S6: High confidence miRNA-interaction sites in 3'UTRs.

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