Detail Information

Basic Information:


  VIRBase ID:  

HHID00038551

  Virus:  

Human betaherpesvirus 5 (HHV-5)

  Host:  

Homo sapiens

  Confidence Score:  

0.6666

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-642a-5p hsa_circ_0001338
miRBase
Accession/Entrez ID		 MIMAT0003312 hsa_circ_0001338
Organism Homo sapiens Homo sapiens
Category miRNA circRNA
Alias - -

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-642a-5p
rs1187651627 chr19:45674964    G/GATCCCCCACCCCAA
rs1441411829 chr19:45674963    TGGGGTGGGG/T
rs775648115 chr19:45674943    G/T
rs374751972 chr19:45674950    T/A
rs78902025 chr19:45674948    T/G

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-642a-5p
Exosome Primary ovarian tumor cells|Serum     18589210
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Mesenchymal stem cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-642a-5p
Interactor2: hsa_circ_0001338

Evidence Support:


Weak-Evidence Illumina sequencing//Sanger sequencing
Prediction-Evidence miRanda//Targetscan
Support Database ViRBase

References:


PMID 30576257 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line THP1 cells Interactor2 expression None
Description Similarly, the same microRNA could bind to multiple circRNAs, and these include the top 10 microRNAs differently expressed in mock-infected vs. latent-infected THP-1 cells we had detected previously (38), which are listed in Table 3.

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