Basic Information:

  VIRBase ID:  

HHID00037638

  Virus:  

Gallid alphaherpesvirus 2

  Host:  

Gallus gallus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      gga-miR-218-3p:  MIMAT0026518          ACTB:  NM_205518     

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Interactor Information:

	Interactor1	Interactor2
Symbol	gga-miR-218-3p	ACTB
miRBase Accession/Entrez ID	MIMAT0026518	396526
Organism	Gallus gallus	Gallus gallus
Category	miRNA	mRNA
Alias	-	actin//Bact

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	ACTB	Cell leading edge Fibroblasts     15923655 Lamellipodium Fibroblasts     15377515 Lamellipodium Fibroblastic single cells     2095368 Protrusion Fibroblasts     15923655

Interaction Network (The top 100 interactions):

Interactor1: gga-miR-218-3p
Interactor2: ACTB

Evidence Support:

Weak-Evidence	PAR-CLIP
Prediction-Evidence	PARalyzer
Support Database	ViRBase

References:

PMID	24449754	Target region	CDS
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	MSB1 cells	Interactor2 expression	None
Description	A list of all RISC binding clusters identified, with their predicted miRNAs, is given in Table S1 in the supplemental material. Of these 16,585 binding clusters, PARalyzer predicted 1, 104 cellular mRNAs that were bound by one or more MDV-1 miRNAs, while 1, 183 cellular mRNAs were predicted to be bound by one or more MDV-2 miRNAs.