Detail Information

Basic Information:


  VIRBase ID:  

HHID00029676

  Virus:  

Gallid alphaherpesvirus 2

  Host:  

Gallus gallus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

Interactor Information:


Interactor1 Interactor2
Symbol gga-miR-223 TMA16
miRBase
Accession/Entrez ID		 MIMAT0001140 770087
Organism Gallus gallus Gallus gallus
Category miRNA mRNA
Alias - C4H4ORF43//C4orf43

Interaction Network (The top 100 interactions):


Interactor1: gga-miR-223
Interactor2: TMA16

Evidence Support:


Weak-Evidence PAR-CLIP
Prediction-Evidence PARalyzer
Support Database ViRBase

References:


PMID 24449754 Target region CDS
Source ViRBase Interactor1 expression None
Tissue or cell line MSB1 cells Interactor2 expression None
Description A list of all RISC binding clusters identified, with their predicted miRNAs, is given in Table S1 in the supplemental material. Of these 16,585 binding clusters, PARalyzer predicted 1, 104 cellular mRNAs that were bound by one or more MDV-1 miRNAs, while 1, 183 cellular mRNAs were predicted to be bound by one or more MDV-2 miRNAs.

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