Basic Information:

  VIRBase ID:  

HHID00026523

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1304-3p:  MIMAT0022720          CPED1:  NM_001105533     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-1304-3p	CPED1
miRBase Accession/Entrez ID	MIMAT0022720	79974
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	C7orf58

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-1304-3p	rs1442154681 chr11:93733696    T/G rs201086870 chr11:93733694    G/T rs2155248 chr11:93733700    G/C rs2155248 chr11:93733700    G/T rs751129343 chr11:93733701    G/A rs752455867 chr11:93733697    C/T rs753786516 chr11:93733693    G/A rs753786516 chr11:93733693    G/T rs758093324 chr11:93733698    G/A rs760841322 chr11:93733691    G/C rs766304845 chr11:93733692    G/A rs766304845 chr11:93733692    G/C rs1249769237 chr11:93733705    C/T rs756791611 chr11:93733709    G/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CPED1	chr7:120790338(+) A-I      intronic chr7:120784393(+) A-I      intronic chr7:120784368(+) A-I      intronic chr7:120727916(+) A-I      intronic chr7:120727925(+) A-I      intronic chr7:120727938(+) A-I      intronic chr7:120650450(+) A-I      intronic chr7:120727896(+) A-I      intronic chr7:120727957(+) A-I      intronic chr7:120727966(+) A-I      intronic chr7:120727976(+) A-I      intronic chr7:120790387(+) A-I      intronic chr7:120728489(+) A-I      intronic chr7:120728511(+) A-I      intronic chr7:120728530(+) A-I      intronic chr7:120873500(+) A-I      intronic chr7:120649479(+) A-I      intronic chr7:120854512(+) A-I      intronic chr7:120777479(+) A-I      intronic chr7:120739539(+) A-I      intronic chr7:120728619(+) A-I      intronic chr7:120728622(+) A-I      intronic chr7:120654549(+) A-I      intronic chr7:120718547(+) A-I      intronic chr7:120727815(+) A-I      intronic chr7:120727818(+) A-I      intronic chr7:120727831(+) A-I      intronic chr7:120727889(+) A-I      intronic chr7:120796492(+) A-I      intronic chr7:120796516(+) A-I      intronic chr7:120796517(+) A-I      intronic chr7:120796518(+) A-I      intronic chr7:120796520(+) A-I      intronic chr7:120796521(+) A-I      intronic chr7:120796522(+) A-I      intronic chr7:120796525(+) A-I      intronic chr7:120796533(+) A-I      intronic chr7:120796539(+) A-I      intronic chr7:120796540(+) A-I      intronic chr7:120796562(+) A-I      intronic chr7:120796565(+) A-I      intronic chr7:120739583(+) A-I      intronic chr7:120910150(+) A-I      intronic chr7:120861140(+) A-I      intronic chr7:120861047(+) A-I      intronic chr7:120861046(+) A-I      intronic chr7:120796469(+) A-I      intronic chr7:120796467(+) A-I      intronic chr7:120796317(+) A-I      intronic chr7:120790625(+) A-I      intronic chr7:120790477(+) A-I      intronic chr7:120650422(+) A-I      intronic chr7:120796561(+) A-I      intronic chr7:120790339(+) A-I      intronic chr7:120727899(+) A-I      intronic chr7:120727994(+) A-I      intronic chr7:120839627(+) A-I      intronic chr7:120728503(+) A-I      intronic chr7:120841363(+) A-I      intronic chr7:120727937(+) A-I      intronic chr7:120913420(+) A-I      intronic chr7:120728566(+) A-I      intronic chr7:120839584(+) A-I      intronic chr7:120728624(+) A-I      intronic chr7:120728625(+) A-I      intronic chr7:120728593(+) A-I      intronic chr7:120727998(+) A-I      intronic chr7:120649616(+) A-I      intronic chr7:120841330(+) A-I      intronic chr7:120727853(+) A-I      intronic chr7:120730807(+) A-I      intronic chr7:120839610(+) A-I      intronic chr7:120728592(+) A-I      intronic

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	CPED1	chr7:120628931-120628932(+) m6A 5'UTR       24981863 chr7:120628961-120628962(+) m6A 5'UTR       24981863 chr7:120629107-120629108(+) m6A 5'UTR//intron       24981863 chr7:120629145-120629146(+) m6A 5'UTR//intron       24981863 chr7:120629156-120629157(+) m6A 5'UTR//intron       24981863 chr7:120629175-120629176(+) m6A 5'UTR//intron       24981863 chr7:120629496-120629497(+) m6A 5'UTR//exon       24981863 chr7:120629505-120629506(+) m6A 5'UTR//exon       24981863 chr7:120629560-120629561(+) m6A 5'UTR//exon       24981863 chr7:120629587-120629588(+) m6A 5'UTR//exon       24981863 chr7:120629647-120629648(+) m6A 5'UTR//exon       24209618//24981863 chr7:120629668-120629669(+) m6A 5'UTR//exon       24209618//24981863//22575960 chr7:120629768-120629769(+) m6A CDS//exon       22575960 chr7:120935588-120935589(+) m6A CDS       24209618//24981863 chr7:120935697-120935698(+) m6A CDS       24209618//24981863 chr7:120935757-120935758(+) m6A 3'UTR       24209618//24981863 chr7:120936027-120936028(+) m6A 3'UTR       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-1304-3p	Exosome Plasma     23663360 Exosome Kidney tissue     - Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
	CPED1	Chromatin K562 cells     - Cytosol HCC cell line (HepG2)|K562 cells     - Exosome Blood     - Membrane HCC cell line (HepG2)|K562 cells     - Nucleolus K562 cells     - Nucleoplasm K562 cells     - Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-1304-3p
Interactor2: CPED1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRDB//miRTarBase//miRWalk//Targetscan
Support Database	ViRBase

References:

PMID	32232013	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HUVEC cells	Interactor2 expression	Upregulation
Description	Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).