Detail Information

Basic Information:


  VIRBase ID:  

HHID00026498

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1304-3p:           LAMP3:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1304-3p LAMP3
miRBase
Accession/Entrez ID		 MIMAT0022720 27074
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CD208//DC LAMP//DC-LAMP//DCLAMP//LAMP//LAMP-3//TSC403

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1304-3p
rs1442154681 chr11:93733696    T/G
rs201086870 chr11:93733694    G/T
rs2155248 chr11:93733700    G/C
rs2155248 chr11:93733700    G/T
rs751129343 chr11:93733701    G/A
rs752455867 chr11:93733697    C/T
rs753786516 chr11:93733693    G/A
rs753786516 chr11:93733693    G/T
rs758093324 chr11:93733698    G/A
rs760841322 chr11:93733691    G/C
rs766304845 chr11:93733692    G/A
rs766304845 chr11:93733692    G/C
rs1249769237 chr11:93733705    C/T
rs756791611 chr11:93733709    G/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR LAMP3
chr3:182848053(-) A-I      intronic
chr3:182846509(-) A-I      intronic
chr3:182846534(-) A-I      intronic
chr3:182848241(-) A-I      intronic
chr3:182848219(-) A-I      intronic
chr3:182864968(-) A-I      intronic
chr3:182864949(-) A-I      intronic
chr3:182864948(-) A-I      intronic
chr3:182864588(-) A-I      intronic
chr3:182864566(-) A-I      intronic
chr3:182848156(-) A-I      intronic
chr3:182867148(-) A-I      intronic
chr3:182846457(-) A-I      intronic
chr3:182864398(-) A-I      intronic
chr3:182845860(-) A-I      intronic
chr3:182845827(-) A-I      intronic
chr3:182855767(-) A-I      intronic
chr3:182865586(-) A-I      intronic
chr3:182855745(-) A-I      intronic
chr3:182855719(-) A-I      intronic
chr3:182855705(-) A-I      intronic
chr3:182855693(-) A-I      intronic
chr3:182855612(-) A-I      intronic
chr3:182844999(-) A-I      intronic
chr3:182854921(-) A-I      intronic
chr3:182854888(-) A-I      intronic
chr3:182842558(-) A-I      intronic
chr3:182842533(-) A-I      intronic
chr3:182865701(-) A-I      intronic
chr3:182848111(-) A-I      intronic
chr3:182855752(-) A-I      intronic
chr3:182841103(-) A-I      3'UTR
chr3:182841102(-) A-I      3'UTR
chr3:182841084(-) A-I      3'UTR
chr3:182841117(-) A-I      3'UTR
chr3:182841112(-) A-I      3'UTR
chr3:182841090(-) A-I      3'UTR
chr3:182841104(-) A-I      3'UTR
chr3:182845142(-) A-I      intronic
chr3:182846523(-) A-I      intronic
chr3:182845045(-) A-I      intronic
chr3:182845752(-) A-I      intronic
chr3:182845755(-) A-I      intronic
chr3:182864842(-) A-I      intronic
chr3:182865665(-) A-I      intronic
chr3:182851343(-) A-I      intronic
chr3:182848115(-) A-I      intronic
chr3:182845730(-) A-I      intronic
chr3:182857059(-) A-I      intronic
chr3:182865778(-) A-I      intronic
chr3:182874000(-) A-I      intronic
chr3:182847948(-) A-I      intronic
chr3:182845089(-) A-I      intronic
chr3:182845824(-) A-I      intronic
chr3:182846605(-) A-I      intronic
chr3:182844995(-) A-I      intronic
chr3:182841325(-) A-I      3'UTR
chr3:182841235(-) A-I      3'UTR
chr3:182845675(-) A-I      intronic
chr3:182846609(-) A-I      intronic
chr3:182865594(-) A-I      intronic
chr3:182846596(-) A-I      intronic
chr3:182844953(-) A-I      intronic
chr3:182857102(-) A-I      intronic
chr3:182846533(-) A-I      intronic
chr3:182842464(-) A-I      intronic
chr3:182855704(-) A-I      intronic
chr3:182851215(-) A-I      intronic
chr3:182844952(-) A-I      intronic
chr3:182855812(-) A-I      intronic
chr3:182855884(-) A-I      intronic
chr3:182845204(-) A-I      intronic
chr3:182845814(-) A-I      intronic
chr3:182851281(-) A-I      intronic
chr3:182848085(-) A-I      intronic
chr3:182845050(-) A-I      intronic
chr3:182845119(-) A-I      intronic
chr3:182865760(-) A-I      intronic
chr3:182862626(-) A-I      intronic
chr3:182846468(-) A-I      intronic
chr3:182846597(-) A-I      intronic
chr3:182855806(-) A-I      intronic
chr3:182842498(-) A-I      intronic
chr3:182864989(-) A-I      intronic
chr3:182857066(-) A-I      intronic
chr3:182845194(-) A-I      intronic
chr3:182845738(-) A-I      intronic
chr3:182846497(-) A-I      intronic
chr3:182846602(-) A-I      intronic
chr3:182846557(-) A-I      intronic
chr3:182851280(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED LAMP3
chr3:182844953(-) A-I intron -    22327324
chr3:182845194(-) A-I intron -    22327324
chr3:182845685(-) A-I intron -    22327324
chr3:182846533(-) A-I intron -    22327324
chr3:182846605(-) A-I intron -    22327324
chr3:182846609(-) A-I intron -    22327324
chr3:182844744(-) A-G intron -    22484847
chr3:182841207(-) G-A exon 3'UTR    22484847
chr3:182842464(-) A-G intron -    22484847
chr3:182842498(-) A-G intron -    22484847
chr3:182844952(-) A-G intron -    22484847
chr3:182844953(-) A-G intron -    22484847
chr3:182844995(-) A-G intron -    22484847
chr3:182845045(-) A-G intron -    22484847
chr3:182845050(-) A-G intron -    22484847
chr3:182845089(-) A-G intron -    22484847
chr3:182845119(-) A-G intron -    22484847
chr3:182845141(-) A-G intron -    22484847
chr3:182845142(-) A-G intron -    22484847
chr3:182845150(-) A-G intron -    22484847
chr3:182845194(-) A-G intron -    22484847
chr3:182845204(-) A-G intron -    22484847
chr3:182845675(-) A-G intron -    22484847
chr3:182845730(-) A-G intron -    22484847
chr3:182845738(-) A-G intron -    22484847
chr3:182845752(-) A-G intron -    22484847
chr3:182845755(-) A-G intron -    22484847
chr3:182845814(-) A-G intron -    22484847
chr3:182845824(-) A-G intron -    22484847
chr3:182845935(-) G-T intron -    22484847
chr3:182846468(-) A-G intron -    22484847
chr3:182846494(-) A-G intron -    22484847
chr3:182846497(-) A-G intron -    22484847
chr3:182846523(-) A-G intron -    22484847
chr3:182846533(-) A-G intron -    22484847
chr3:182846557(-) A-G intron -    22484847
chr3:182846596(-) A-G intron -    22484847
chr3:182846597(-) A-G intron -    22484847
chr3:182846602(-) A-G intron -    22484847
chr3:182846605(-) A-G intron -    22484847
chr3:182846609(-) A-G intron -    22484847
chr3:182846820(-) T-C intron -    22484847
chr3:182848075(-) A-G intron -    22484847
chr3:182848085(-) A-G intron -    22484847
chr3:182851281(-) A-G intron -    22484847
chr3:182851343(-) A-G intron -    22484847
chr3:182851395(-) A-G intron -    22484847
chr3:182855675(-) A-G intron -    22484847
chr3:182855704(-) A-G intron -    22484847
chr3:182855806(-) A-G intron -    22484847
chr3:182855807(-) A-G intron -    22484847
chr3:182855812(-) A-G intron -    22484847
chr3:182856933(-) A-G intron -    22484847
chr3:182856960(-) A-G intron -    22484847
chr3:182857066(-) A-G intron -    22484847
chr3:182857102(-) A-G intron -    22484847
chr3:182864842(-) A-G intron -    22484847
chr3:182864931(-) A-G intron -    22484847
chr3:182864987(-) A-G intron -    22484847
chr3:182864989(-) A-G intron -    22484847
chr3:182865594(-) A-G intron -    22484847
chr3:182865665(-) A-G intron -    22484847
chr3:182865704(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase LAMP3
chr3:182871523-182871524(-) m6A CDS       27773535//27371828
chr3:182871555-182871556(-) m6A CDS       28052920//27773535//27371828
chr3:182871648-182871649(-) m6A CDS       24209618//24981863//28052920//27773535//27371828
chr3:182871732-182871733(-) m6A CDS       24209618//24981863//28052920//27773535
chr3:182871755-182871756(-) m6A CDS       24209618//24981863//28052920//27773535
chr3:182871789-182871790(-) m6A CDS       24209618//24981863//28052920//27773535
chr3:182871950-182871951(-) m6A CDS       24209618//28052920//27773535
chr3:182871999-182872000(-) m6A CDS       24209618//28052920//27773535
chr3:182872041-182872042(-) m6A CDS       28052920//27773535
chr3:182872078-182872079(-) m6A CDS       28052920//27773535
chr3:182872088-182872089(-) m6A CDS       28052920//27773535
chr3:182872131-182872132(-) m6A CDS       27371828
chr3:182878651-182878652(-) m6A 5'UTR//exon//intron       27371828
chr3:182878711-182878712(-) m6A 5'UTR//exon//intron       27371828

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1304-3p
Exosome Plasma     23663360
Exosome Kidney tissue     -
Microvesicle Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
LAMP3
Exosome Blood     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1304-3p
Interactor2: LAMP3

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRDB//miRTarBase//miRWalk//Targetscan
Support Database ViRBase

References:


PMID 32232013 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line HUVEC cells Interactor2 expression Upregulation
Description Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).

Starting a new search, please wait ...