Detail Information

Basic Information:


  VIRBase ID:  

HHID00026331

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1343-3p:           CASZ1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1343-3p CASZ1
miRBase
Accession/Entrez ID		 MIMAT0019776 54897
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - CAS11//CST//dJ734G22.1//SRG//ZNF693

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1343-3p
rs1030024806 chr11:34941897    C/T
rs1228966720 chr11:34941904    T/G
rs1335261302 chr11:34941900    G/A
rs568333985 chr11:34941898    C/G
rs748356067 chr11:34941908    G/A
rs950497159 chr11:34941907    C/T

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CASZ1
chr1:10810570(-) A-I      intronic
chr1:10810597(-) A-I      intronic
chr1:10705565(-) A-I      intronic
chr1:10818390(-) A-I      intronic
chr1:10817745(-) A-I      intronic
chr1:10810834(-) A-I      intronic
chr1:10810691(-) A-I      intronic
chr1:10817736(-) A-I      intronic
chr1:10817763(-) A-I      intronic
chr1:10817716(-) A-I      intronic
chr1:10818388(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED CASZ1
chr1:10744725(-) A-I intron -    21960545

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CASZ1
chr1:10697109-10697110(-) m6A 3'UTR       27773535
chr1:10697129-10697130(-) m6A 3'UTR       27773535
chr1:10697192-10697193(-) m6A 3'UTR//exon       27773535//22608085
chr1:10697218-10697219(-) m6A 3'UTR//exon       27773535//22608085
chr1:10697232-10697233(-) m6A 3'UTR//exon       27773535//22608085
chr1:10697291-10697292(-) m6A 3'UTR//exon       27773535//27371828
chr1:10697331-10697332(-) m6A 3'UTR//exon       27773535//27371828
chr1:10697355-10697356(-) m6A 3'UTR//exon       27773535//27371828
chr1:10697427-10697428(-) m6A 3'UTR//exon       27371828
chr1:10698487-10698488(-) m6A 3'UTR//intron       27773536
chr1:10698620-10698621(-) m6A 3'UTR//intron       27773536
chr1:10698648-10698649(-) m6A 3'UTR//intron       27773536
chr1:10698747-10698748(-) m6A 3'UTR//intron       25456834//27371828//27773536
chr1:10698777-10698778(-) m6A 3'UTR//exon       25456834//27371828//27773536//22608085
chr1:10698830-10698831(-) m6A 3'UTR       25456834//27371828//27773536//22608085
chr1:10698856-10698857(-) m6A 3'UTR       25456834//27773536//22608085
chr1:10698868-10698869(-) m6A 3'UTR       25456834//27773536//22608085
chr1:10698887-10698888(-) m6A 3'UTR       25456834//27773536//22608085
chr1:10699069-10699070(-) m6A CDS       27773536
chr1:10699137-10699138(-) m6A CDS       25456834//27773536
chr1:10699512-10699513(-) m6A CDS       25456834//27371828//27773536
chr1:10699661-10699662(-) m6A CDS       24284625//25456834//24981863//27371828//27773536//22608085
chr1:10699824-10699825(-) m6A CDS       24284625//22608085
chr1:10699890-10699891(-) m6A CDS       24284625//22608085
chr1:10699953-10699954(-) m6A CDS       24284625//25456834//22608085
chr1:10700055-10700056(-) m6A CDS       -
chr1:10713390-10713391(-) m6A exon//intron       25456834
chr1:10713576-10713577(-) m6A CDS//exon       24284625//25456834
chr1:10713815-10713816(-) m6A CDS//exon       24284625//25456834//24981863//27371828
chr1:10713909-10713910(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085
chr1:10713972-10713973(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536//22608085
chr1:10714245-10714246(-) m6A CDS//exon       24981863//27773535//27371828
chr1:10714494-10714495(-) m6A CDS//exon       24981863//27773535//27371828
chr1:10714501-10714502(-) m6A CDS//exon       24981863//27773535
chr1:10714532-10714533(-) m6A CDS//exon       24981863//27773535
chr1:10714595-10714596(-) m6A CDS//exon       27773535
chr1:10718588-10718589(-) m6A CDS//exon       25456834//27773535
chr1:10718611-10718612(-) m6A CDS//exon       25456834//27773535
chr1:10718626-10718627(-) m6A CDS//exon       25456834//27773535
chr1:10719774-10719775(-) m6A CDS//exon       25456834//27773535
chr1:10719795-10719796(-) m6A CDS//exon       25456834//27773535
chr1:10719999-10720000(-) m6A CDS//exon       24284625//27371828
chr1:10720137-10720138(-) m6A CDS//exon       -
chr1:10720144-10720145(-) m6A CDS//exon       -
chr1:10720187-10720188(-) m6A CDS//exon       27773536
chr1:10720239-10720240(-) m6A CDS//exon       25456834//27773536
chr1:10720317-10720318(-) m6A CDS//exon       25456834//27773536
chr1:10720514-10720515(-) m6A CDS//exon       27371828
chr1:10720571-10720572(-) m6A CDS//exon       24284625//27371828
chr1:10720649-10720650(-) m6A exon//intron       27371828
chr1:10725168-10725169(-) m6A CDS//exon       27773536
chr1:10725243-10725244(-) m6A CDS//exon       27371828//27773536
chr1:10725399-10725400(-) m6A CDS//exon       24284625//25456834//24981863//27371828//27773536
chr1:10725456-10725457(-) m6A CDS//exon       24284625//25456834//27371828//27773536

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1343-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CASZ1
Exosome Blood     -
Nucleolus K562 cells     -
Nucleus HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1343-3p
Interactor2: CASZ1

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRDB//miRTarBase//miRWalk//Targetscan
Support Database ViRBase

References:


PMID 32232013 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line HUVEC cells Interactor2 expression Upregulation
Description Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).

Starting a new search, please wait ...