Detail Information

Basic Information:


  VIRBase ID:  

HHID00026316

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-1343-3p:           APOL2:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-1343-3p APOL2
miRBase
Accession/Entrez ID		 MIMAT0019776 23780
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - APOL-II//APOL3

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-1343-3p
rs1030024806 chr11:34941897    C/T
rs1228966720 chr11:34941904    T/G
rs1335261302 chr11:34941900    G/A
rs568333985 chr11:34941898    C/G
rs748356067 chr11:34941908    G/A
rs950497159 chr11:34941907    C/T

RNA Editing:


Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED APOL2
chr22:36633532(-) C-A intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase APOL2
chr22:36622270-36622271(-) m6A 3'UTR       27773535
chr22:36622735-36622736(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr22:36622757-36622758(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr22:36622769-36622770(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr22:36622816-36622817(-) m6A 3'UTR       24284625//24209618//24981863//28052920//27773535//27371828//22608085
chr22:36622861-36622862(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr22:36622877-36622878(-) m1A 3'UTR       26863196
chr22:36622902-36622903(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr22:36622934-36622935(-) m6A 3'UTR       24284625//24981863//28052920//27773535//22608085
chr22:36623025-36623026(-) m6A 3'UTR       24284625//24209618//24981863//27773535
chr22:36623069-36623070(-) m6A 3'UTR       24284625//24209618//27773535
chr22:36623242-36623243(-) m6A 3'UTR       24209618
chr22:36623297-36623298(-) m6A 3'UTR       24209618
chr22:36623388-36623389(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//27773536
chr22:36623399-36623400(-) m6A 3'UTR       24284625//24209618//24981863//27773535//27371828//27773536
chr22:36623456-36623457(-) m6A CDS       24284625//24209618//27773535//27371828//27773536
chr22:36623649-36623650(-) m6A CDS       24284625//24209618//27773535
chr22:36623698-36623699(-) m6A CDS       24284625//24209618//27773535
chr22:36623795-36623796(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:36623858-36623859(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:36623909-36623910(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:36623945-36623946(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:36623953-36623954(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:36624014-36624015(-) m6A CDS       24284625//24209618//25456834//24981863//28052920//26404942//27773535//27371828//22575960//22608085
chr22:36624242-36624243(-) m6A CDS       24981863//28052920
chr22:36624257-36624258(-) m6A CDS       24981863//28052920
chr22:36624263-36624264(-) m6A CDS       24981863//28052920
chr22:36624293-36624294(-) m6A CDS       28052920
chr22:36627393-36627394(-) m6A CDS       28052920
chr22:36629261-36629262(-) m6A 5'UTR//CDS       24981863
chr22:36629275-36629276(-) m6A 5'UTR//CDS       24981863
chr22:36629491-36629492(-) m6A 5'UTR//CDS       24209618//24981863//27773535
chr22:36630343-36630344(-) m6A 5'UTR//intron       24981863//27773535
chr22:36630356-36630357(-) m6A 5'UTR//intron       24981863//27773535
chr22:36630375-36630376(-) m6A 5'UTR//intron       24981863
chr22:36632958-36632959(-) m6A exon//intron       -
chr22:36632985-36632986(-) m6A exon//intron       -
chr22:36633018-36633019(-) m6A exon//intron       24284625
chr22:36633181-36633182(-) m6A CDS//exon//intron       25456834//27371828
chr22:36633285-36633286(-) m6A exon//intron       25456834//24981863//27371828
chr22:36635207-36635208(-) m6A 5'UTR//exon//intron       24981863
chr22:36635265-36635266(-) m6A 5'UTR//exon//intron       24981863
chr22:36635528-36635529(-) m6A 5'UTR//CDS//exon       24981863//26404942
chr22:36635698-36635699(-) m6A exon//intron       24981863
chr22:36635803-36635804(-) m6A 5'UTR       24981863
chr22:36635825-36635826(-) m6A 5'UTR       24981863
chr22:36635861-36635862(-) m6A 5'UTR       24981863
chr22:36635916-36635917(-) m6A 5'UTR       24981863
chr22:36635986-36635987(-) m6A 5'UTR       24981863
chr22:36635994-36635995(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-1343-3p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
APOL2
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-1343-3p
Interactor2: APOL2

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRDB//miRTarBase//miRWalk//Targetscan
Support Database ViRBase

References:


PMID 32232013 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line HUVEC cells Interactor2 expression Upregulation
Description Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).

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