Detail Information

Basic Information:


  VIRBase ID:  

HHID00026203

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3614-5p:           RBM43:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3614-5p RBM43
miRBase
Accession/Entrez ID		 MIMAT0017992 375287
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C2orf38

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3614-5p
rs1276310586 chr17:56891320    G/A
rs1422621595 chr17:56891335    C/A
rs1422621595 chr17:56891335    C/G
rs533715139 chr17:56891339    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR RBM43
chr2:152116559(-) A-I      intronic
chr2:152116573(-) A-I      intronic
chr2:152116445(-) A-I      intronic
chr2:152112679(-) A-I      intronic
chr2:152116447(-) A-I      intronic
chr2:152105919(-) A-I      3'UTR
chr2:152107056(-) A-I      3'UTR
chr2:152105927(-) A-I      3'UTR
chr2:152105944(-) A-I      3'UTR
chr2:152106072(-) A-I      3'UTR
chr2:152106094(-) A-I      3'UTR
chr2:152107109(-) A-I      3'UTR
chr2:152106069(-) A-I      3'UTR
chr2:152106013(-) A-I      3'UTR
chr2:152106905(-) A-I      3'UTR
chr2:152106068(-) A-I      3'UTR
chr2:152106164(-) A-I      3'UTR
chr2:152106994(-) A-I      3'UTR
chr2:152105997(-) A-I      3'UTR
chr2:152106063(-) A-I      3'UTR
chr2:152105989(-) A-I      3'UTR
chr2:152106867(-) A-I      3'UTR
chr2:152106854(-) A-I      3'UTR
chr2:152106095(-) A-I      3'UTR
chr2:152106182(-) A-I      3'UTR
chr2:152106929(-) A-I      3'UTR
chr2:152107031(-) A-I      3'UTR
chr2:152106055(-) A-I      3'UTR
chr2:152106003(-) A-I      3'UTR
chr2:152106991(-) A-I      3'UTR
chr2:152106170(-) A-I      3'UTR
chr2:152105981(-) A-I      3'UTR
chr2:152105925(-) A-I      3'UTR
chr2:152106866(-) A-I      3'UTR
chr2:152106169(-) A-I      3'UTR
chr2:152105921(-) A-I      3'UTR
chr2:152105960(-) A-I      3'UTR
chr2:152107001(-) A-I      3'UTR
chr2:152106027(-) A-I      3'UTR
chr2:152106102(-) A-I      3'UTR
chr2:152105964(-) A-I      3'UTR
chr2:152105959(-) A-I      3'UTR
chr2:152113167(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED RBM43
chr2:152106055(-) A-I exon 3'UTR    15342557
chr2:152106063(-) A-I exon 3'UTR    15342557
chr2:152106095(-) A-I exon 3'UTR    15342557
chr2:152106102(-) A-I exon 3'UTR    15342557
chr2:152106103(-) A-I exon 3'UTR    15342557
chr2:152106131(-) A-I exon 3'UTR    15342557
chr2:152106661(-) A-I exon 3'UTR    15342557
chr2:152106946(-) A-I exon 3'UTR    15342557
chr2:152106954(-) A-I exon 3'UTR    15342557
chr2:152106991(-) A-I exon 3'UTR    15342557
chr2:152107001(-) A-I exon 3'UTR    15342557
chr2:152107029(-) A-I exon 3'UTR    15342557
chr2:152107214(-) A-I exon 3'UTR    15342557
chr2:152106063(-) A-G exon 3'UTR    22484847
chr2:152106169(-) A-G exon 3'UTR    22484847
chr2:152106991(-) A-G exon 3'UTR    22484847
chr2:152107029(-) A-G exon 3'UTR    22484847
chr2:152107113(-) T-G exon 3'UTR    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase RBM43
chr2:152107505-152107506(-) m6A CDS       27773535
chr2:152107551-152107552(-) m6A CDS       24981863//27773535
chr2:152107610-152107611(-) m6A CDS       24981863//27773535
chr2:152107671-152107672(-) m6A CDS       24981863//27773535
chr2:152107681-152107682(-) m6A CDS       24981863//27773535//22608085
chr2:152107800-152107801(-) m6A CDS       24981863//27773535//22608085
chr2:152107856-152107857(-) m6A CDS       24284625//24981863//27773535//22608085
chr2:152107871-152107872(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:152107926-152107927(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:152107963-152107964(-) m6A CDS       24284625//24209618//24981863//27773535//22608085
chr2:152108058-152108059(-) m6A CDS       24981863//27371828//22608085
chr2:152108101-152108102(-) m6A CDS       24981863
chr2:152108114-152108115(-) m6A CDS       24981863
chr2:152118327-152118328(-) m6A 5'UTR       24981863
chr2:152118333-152118334(-) m6A 5'UTR       24981863
chr2:152118345-152118346(-) m6A 5'UTR       24981863
chr2:152118381-152118382(-) m6A 5'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3614-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
RBM43
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3614-5p
Interactor2: RBM43

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRDB//miRTarBase//miRWalk//Targetscan
Support Database ViRBase

References:


PMID 32232013 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line HUVEC cells Interactor2 expression Upregulation
Description Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).

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