Detail Information

Basic Information:


  VIRBase ID:  

HHID00026161

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3614-5p:           CPED1:      

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Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-3614-5p CPED1
miRBase
Accession/Entrez ID		 MIMAT0017992 79974
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - C7orf58

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-3614-5p
rs1276310586 chr17:56891320    G/A
rs1422621595 chr17:56891335    C/A
rs1422621595 chr17:56891335    C/G
rs533715139 chr17:56891339    T/C

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR CPED1
chr7:120790338(+) A-I      intronic
chr7:120784393(+) A-I      intronic
chr7:120784368(+) A-I      intronic
chr7:120727916(+) A-I      intronic
chr7:120727925(+) A-I      intronic
chr7:120727938(+) A-I      intronic
chr7:120650450(+) A-I      intronic
chr7:120727896(+) A-I      intronic
chr7:120727957(+) A-I      intronic
chr7:120727966(+) A-I      intronic
chr7:120727976(+) A-I      intronic
chr7:120790387(+) A-I      intronic
chr7:120728489(+) A-I      intronic
chr7:120728511(+) A-I      intronic
chr7:120728530(+) A-I      intronic
chr7:120873500(+) A-I      intronic
chr7:120649479(+) A-I      intronic
chr7:120854512(+) A-I      intronic
chr7:120777479(+) A-I      intronic
chr7:120739539(+) A-I      intronic
chr7:120728619(+) A-I      intronic
chr7:120728622(+) A-I      intronic
chr7:120654549(+) A-I      intronic
chr7:120718547(+) A-I      intronic
chr7:120727815(+) A-I      intronic
chr7:120727818(+) A-I      intronic
chr7:120727831(+) A-I      intronic
chr7:120727889(+) A-I      intronic
chr7:120796492(+) A-I      intronic
chr7:120796516(+) A-I      intronic
chr7:120796517(+) A-I      intronic
chr7:120796518(+) A-I      intronic
chr7:120796520(+) A-I      intronic
chr7:120796521(+) A-I      intronic
chr7:120796522(+) A-I      intronic
chr7:120796525(+) A-I      intronic
chr7:120796533(+) A-I      intronic
chr7:120796539(+) A-I      intronic
chr7:120796540(+) A-I      intronic
chr7:120796562(+) A-I      intronic
chr7:120796565(+) A-I      intronic
chr7:120739583(+) A-I      intronic
chr7:120910150(+) A-I      intronic
chr7:120861140(+) A-I      intronic
chr7:120861047(+) A-I      intronic
chr7:120861046(+) A-I      intronic
chr7:120796469(+) A-I      intronic
chr7:120796467(+) A-I      intronic
chr7:120796317(+) A-I      intronic
chr7:120790625(+) A-I      intronic
chr7:120790477(+) A-I      intronic
chr7:120650422(+) A-I      intronic
chr7:120796561(+) A-I      intronic
chr7:120790339(+) A-I      intronic
chr7:120727899(+) A-I      intronic
chr7:120727994(+) A-I      intronic
chr7:120839627(+) A-I      intronic
chr7:120728503(+) A-I      intronic
chr7:120841363(+) A-I      intronic
chr7:120727937(+) A-I      intronic
chr7:120913420(+) A-I      intronic
chr7:120728566(+) A-I      intronic
chr7:120839584(+) A-I      intronic
chr7:120728624(+) A-I      intronic
chr7:120728625(+) A-I      intronic
chr7:120728593(+) A-I      intronic
chr7:120727998(+) A-I      intronic
chr7:120649616(+) A-I      intronic
chr7:120841330(+) A-I      intronic
chr7:120727853(+) A-I      intronic
chr7:120730807(+) A-I      intronic
chr7:120839610(+) A-I      intronic
chr7:120728592(+) A-I      intronic

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase CPED1
chr7:120628931-120628932(+) m6A 5'UTR       24981863
chr7:120628961-120628962(+) m6A 5'UTR       24981863
chr7:120629107-120629108(+) m6A 5'UTR//intron       24981863
chr7:120629145-120629146(+) m6A 5'UTR//intron       24981863
chr7:120629156-120629157(+) m6A 5'UTR//intron       24981863
chr7:120629175-120629176(+) m6A 5'UTR//intron       24981863
chr7:120629496-120629497(+) m6A 5'UTR//exon       24981863
chr7:120629505-120629506(+) m6A 5'UTR//exon       24981863
chr7:120629560-120629561(+) m6A 5'UTR//exon       24981863
chr7:120629587-120629588(+) m6A 5'UTR//exon       24981863
chr7:120629647-120629648(+) m6A 5'UTR//exon       24209618//24981863
chr7:120629668-120629669(+) m6A 5'UTR//exon       24209618//24981863//22575960
chr7:120629768-120629769(+) m6A CDS//exon       22575960
chr7:120935588-120935589(+) m6A CDS       24209618//24981863
chr7:120935697-120935698(+) m6A CDS       24209618//24981863
chr7:120935757-120935758(+) m6A 3'UTR       24209618//24981863
chr7:120936027-120936028(+) m6A 3'UTR       24981863

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-3614-5p
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Fibroblasts|Mesenchymal stem cells     -
CPED1
Chromatin K562 cells     -
Cytosol HCC cell line (HepG2)|K562 cells     -
Exosome Blood     -
Membrane HCC cell line (HepG2)|K562 cells     -
Nucleolus K562 cells     -
Nucleoplasm K562 cells     -
Nucleus HCC cell line (HepG2)|HeLa-S3 cells|K562 cells     -

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-3614-5p
Interactor2: CPED1

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRDB//miRTarBase//miRWalk//Targetscan
Support Database ViRBase

References:


PMID 32232013 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line HUVEC cells Interactor2 expression Upregulation
Description Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).

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