Basic Information:

  VIRBase ID:  

HHID00026021

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3182:  MIMAT0015062          CASTOR2:  NM_001145064     

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Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3182	CASTOR2
miRBase Accession/Entrez ID	MIMAT0015062	729438
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	GATSL1//GATSL2

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3182	rs1367036983 chr16:83508358    G/A rs564683390 chr16:83508360    G/A rs923654044 chr16:83508365    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	CASTOR2	chr7:74389162(+) A-I      intronic chr7:74389751(+) A-I      intronic chr7:74391651(+) A-I      intronic chr7:74407240(+) A-I      intronic chr7:74400420(+) A-I      intronic chr7:74400492(+) A-I      intronic chr7:74400478(+) A-I      intronic chr7:74400444(+) A-I      intronic chr7:74832603(-) A-I      intronic chr7:74400443(+) A-I      intronic chr7:74389458(+) A-I      intronic chr7:74386159(+) A-I      intronic chr7:74386853(+) A-I      intronic chr7:74407260(+) A-I      intronic chr7:74389745(+) A-I      intronic chr7:74407250(+) A-I      intronic chr7:74391101(+) A-I      intronic chr7:74407256(+) A-I      intronic chr7:74408662(+) A-I      intronic chr7:74406547(+) A-I      intronic chr7:74385199(+) A-I      intronic

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3182	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	CASTOR2	Chromatin K562 cells     - Exosome Blood     - Nucleoplasm K562 cells     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3182
Interactor2: CASTOR2

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRDB//miRTarBase//miRWalk//Targetscan
Support Database	ViRBase

References:

PMID	32232013	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HUVEC cells	Interactor2 expression	Downregulation
Description	Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).