Basic Information:

  VIRBase ID:  

HHID00025981

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-3182:  MIMAT0015062          HSH2D:  NM_001369809     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	hsa-miR-3182	HSH2D
miRBase Accession/Entrez ID	MIMAT0015062	84941
Organism	Homo sapiens	Homo sapiens
Category	miRNA	mRNA
Alias	-	ALX//HSH2

ncRNA SNP information:

Resource	Symbol	SNP ID	SNP Position	Ref/Alt
miRNASNP-v3	hsa-miR-3182	rs1367036983 chr16:83508358    G/A rs564683390 chr16:83508360    G/A rs923654044 chr16:83508365    C/T

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	HSH2D	chr19:16261151(+) A-I      intronic chr19:16261140(+) A-I      intronic chr19:16261130(+) A-I      intronic chr19:16258118(+) A-I      intronic chr19:16260093(+) A-I      intronic chr19:16260087(+) A-I      intronic chr19:16258898(+) A-I      intronic chr19:16258310(+) A-I      intronic chr19:16258243(+) A-I      intronic chr19:16258151(+) A-I      intronic chr19:16258144(+) A-I      intronic chr19:16248833(+) A-I      intronic chr19:16248939(+) A-I      intronic chr19:16248946(+) A-I      intronic chr19:16251690(+) A-I      intronic chr19:16258134(+) A-I      intronic chr19:16254146(+) A-I      intronic chr19:16255637(+) A-I      intronic chr19:16255689(+) A-I      intronic chr19:16255754(+) A-I      intronic chr19:16255764(+) A-I      intronic chr19:16256206(+) A-I      intronic chr19:16256725(+) A-I      intronic chr19:16256780(+) A-I      intronic chr19:16257692(+) A-I      intronic chr19:16258119(+) A-I      intronic chr19:16257819(+) A-I      intronic chr19:16257772(+) A-I      intronic chr19:16257765(+) A-I      intronic chr19:16257700(+) A-I      intronic chr19:16262654(+) A-I      intronic chr19:16256699(+) A-I      intronic chr19:16267692(+) A-I      intronic chr19:16267270(+) A-I      intronic chr19:16267256(+) A-I      intronic chr19:16267254(+) A-I      intronic chr19:16267228(+) A-I      intronic chr19:16267194(+) A-I      intronic chr19:16267117(+) A-I      intronic chr19:16267049(+) A-I      intronic chr19:16267008(+) A-I      intronic chr19:16266699(+) A-I      intronic chr19:16266618(+) A-I      intronic chr19:16266535(+) A-I      intronic chr19:16262861(+) A-I      intronic chr19:16262796(+) A-I      intronic chr19:16262729(+) A-I      intronic chr19:16262720(+) A-I      intronic chr19:16262661(+) A-I      intronic chr19:16262156(+) A-I      intronic chr19:16262151(+) A-I      intronic chr19:16262080(+) A-I      intronic chr19:16262076(+) A-I      intronic chr19:16262067(+) A-I      intronic chr19:16262047(+) A-I      intronic chr19:16261973(+) A-I      intronic chr19:16261969(+) A-I      intronic chr19:16261935(+) A-I      intronic chr19:16261895(+) A-I      intronic chr19:16261884(+) A-I      intronic chr19:16261879(+) A-I      intronic chr19:16261878(+) A-I      intronic chr19:16261526(+) A-I      intronic chr19:16261338(+) A-I      intronic chr19:16261337(+) A-I      intronic chr19:16261269(+) A-I      intronic chr19:16261194(+) A-I      intronic chr19:16261154(+) A-I      intronic chr19:16260581(+) A-I      intronic chr19:16260574(+) A-I      intronic chr19:16260571(+) A-I      intronic chr19:16260559(+) A-I      intronic chr19:16260222(+) A-I      intronic chr19:16260200(+) A-I      intronic chr19:16260179(+) A-I      intronic chr19:16260112(+) A-I      intronic chr19:16269265(+) A-I      3'UTR chr19:16269266(+) A-I      3'UTR chr19:16269257(+) A-I      3'UTR chr19:16260540(+) A-I      intronic chr19:16261174(+) A-I      intronic chr19:16261010(+) A-I      intronic chr19:16260233(+) A-I      intronic chr19:16262730(+) A-I      intronic chr19:16266510(+) A-I      intronic chr19:16260076(+) A-I      intronic chr19:16260139(+) A-I      intronic chr19:16258130(+) A-I      intronic chr19:16260665(+) A-I      intronic chr19:16267230(+) A-I      intronic chr19:16261038(+) A-I      intronic chr19:16260160(+) A-I      intronic chr19:16260196(+) A-I      intronic chr19:16266655(+) A-I      intronic chr19:16267622(+) A-I      intronic chr19:16260605(+) A-I      intronic chr19:16261561(+) A-I      intronic chr19:16266908(+) A-I      intronic chr19:16260496(+) A-I      intronic chr19:16261655(+) A-I      intronic chr19:16266986(+) A-I      intronic chr19:16267778(+) A-I      intronic chr19:16267597(+) A-I      intronic chr19:16267274(+) A-I      intronic chr19:16261197(+) A-I      intronic chr19:16267268(+) A-I      intronic chr19:16267588(+) A-I      intronic chr19:16258033(+) A-I      intronic chr19:16260152(+) A-I      intronic chr19:16260287(+) A-I      intronic chr19:16258039(+) A-I      intronic chr19:16260138(+) A-I      intronic chr19:16266678(+) A-I      intronic chr19:16261095(+) A-I      intronic chr19:16269224(+) A-I      3'UTR chr19:16260178(+) A-I      intronic chr19:16262041(+) A-I      intronic chr19:16267746(+) A-I      intronic chr19:16262797(+) A-I      intronic chr19:16261483(+) A-I      intronic chr19:16258244(+) A-I      intronic chr19:16266511(+) A-I      intronic chr19:16266524(+) A-I      intronic chr19:16258108(+) A-I      intronic chr19:16267596(+) A-I      intronic chr19:16260284(+) A-I      intronic chr19:16261270(+) A-I      intronic chr19:16267177(+) A-I      intronic chr19:16262124(+) A-I      intronic chr19:16262087(+) A-I      intronic chr19:16260626(+) A-I      intronic chr19:16266548(+) A-I      intronic chr19:16266601(+) A-I      intronic chr19:16267717(+) A-I      intronic chr19:16260113(+) A-I      intronic chr19:16258147(+) A-I      intronic chr19:16256162(+) A-I      intronic chr19:16267147(+) A-I      intronic chr19:16261277(+) A-I      intronic chr19:16261557(+) A-I      intronic chr19:16257810(+) A-I      intronic chr19:16257753(+) A-I      intronic chr19:16260052(+) A-I      intronic chr19:16257367(+) A-I      intronic chr19:16267144(+) A-I      intronic chr19:16261125(+) A-I      intronic chr19:16258023(+) A-I      intronic chr19:16266938(+) A-I      intronic chr19:16261365(+) A-I      intronic chr19:16260032(+) A-I      intronic chr19:16267685(+) A-I      intronic chr19:16261958(+) A-I      intronic chr19:16260036(+) A-I      intronic chr19:16267041(+) A-I      intronic chr19:16260497(+) A-I      intronic chr19:16260130(+) A-I      intronic chr19:16261018(+) A-I      intronic chr19:16266499(+) A-I      intronic chr19:16261185(+) A-I      intronic chr19:16267246(+) A-I      intronic chr19:16267196(+) A-I      intronic chr19:16257845(+) A-I      intronic chr19:16266530(+) A-I      intronic chr19:16260248(+) A-I      intronic chr19:16260131(+) A-I      intronic chr19:16258183(+) A-I      intronic chr19:16256184(+) A-I      intronic chr19:16260165(+) A-I      intronic chr19:16261094(+) A-I      intronic chr19:16261274(+) A-I      intronic chr19:16261078(+) A-I      intronic chr19:16266494(+) A-I      intronic chr19:16267148(+) A-I      intronic chr19:16266982(+) A-I      intronic chr19:16267255(+) A-I      intronic chr19:16256140(+) A-I      intronic chr19:16266902(+) A-I      intronic chr19:16258096(+) A-I      intronic chr19:16256724(+) A-I      intronic chr19:16260974(+) A-I      intronic

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	HSH2D	chr19:16260036(+) A-I intron -    22327324 chr19:16261274(+) A-I intron -    22327324 chr19:16261564(+) A-I intron -    22327324 chr19:16262041(+) A-I intron -    22327324 chr19:16266531(+) A-I intron -    22327324 chr19:16266892(+) A-I intron -    22327324 chr19:16266902(+) A-I intron -    22327324 chr19:16266908(+) A-I intron -    22327324 chr19:16266986(+) A-I intron -    22327324 chr19:16267045(+) A-I intron -    22327324 chr19:16267207(+) A-I intron -    22327324 chr19:16267246(+) A-I intron -    22327324 chr19:16267542(+) A-I intron -    22327324 chr19:16267633(+) A-I intron -    22327324 chr19:16267685(+) A-I intron -    22327324 chr19:16258096(+) A-G intron -    22484847 chr19:16258112(+) A-G intron -    22484847 chr19:16260032(+) A-G intron -    22484847 chr19:16260036(+) A-G intron -    22484847 chr19:16260044(+) A-G intron -    22484847 chr19:16260077(+) A-G intron -    22484847 chr19:16260113(+) A-G intron -    22484847 chr19:16260130(+) A-G intron -    22484847 chr19:16260131(+) A-G intron -    22484847 chr19:16260138(+) A-G intron -    22484847 chr19:16260287(+) A-G intron -    22484847 chr19:16260496(+) A-G intron -    22484847 chr19:16260540(+) A-G intron -    22484847 chr19:16260987(+) A-G intron -    22484847 chr19:16261010(+) A-G intron -    22484847 chr19:16261018(+) A-G intron -    22484847 chr19:16261038(+) A-G intron -    22484847 chr19:16261078(+) A-G intron -    22484847 chr19:16261094(+) A-G intron -    22484847 chr19:16261095(+) A-G intron -    22484847 chr19:16261185(+) A-G intron -    22484847 chr19:16261197(+) A-G intron -    22484847 chr19:16261202(+) A-G intron -    22484847 chr19:16261206(+) A-G intron -    22484847 chr19:16261255(+) A-G intron -    22484847 chr19:16261274(+) A-G intron -    22484847 chr19:16261332(+) A-G intron -    22484847 chr19:16261543(+) C-A intron -    22484847 chr19:16261557(+) A-G intron -    22484847 chr19:16261561(+) A-G intron -    22484847 chr19:16261564(+) A-G intron -    22484847 chr19:16262041(+) A-G intron -    22484847 chr19:16266524(+) A-G intron -    22484847 chr19:16266531(+) A-G intron -    22484847 chr19:16266548(+) A-G intron -    22484847 chr19:16266583(+) A-G intron -    22484847 chr19:16266592(+) A-G intron -    22484847 chr19:16266601(+) A-G intron -    22484847 chr19:16266900(+) A-G intron -    22484847 chr19:16266902(+) A-G intron -    22484847 chr19:16266908(+) A-G intron -    22484847 chr19:16266954(+) A-G intron -    22484847 chr19:16266986(+) A-G intron -    22484847 chr19:16267045(+) A-G intron -    22484847 chr19:16267148(+) A-G intron -    22484847 chr19:16267170(+) G-A intron -    22484847 chr19:16267177(+) A-G intron -    22484847 chr19:16267207(+) A-G intron -    22484847 chr19:16267246(+) A-G intron -    22484847 chr19:16267255(+) A-G intron -    22484847 chr19:16267542(+) A-G intron -    22484847 chr19:16267543(+) A-G intron -    22484847 chr19:16267588(+) A-G intron -    22484847 chr19:16267596(+) A-G intron -    22484847 chr19:16267633(+) A-G intron -    22484847 chr19:16267685(+) A-G intron -    22484847 chr19:16267717(+) A-G intron -    22484847 chr19:16267721(+) A-G intron -    22484847 chr19:16267746(+) A-G intron -    22484847

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	HSH2D	chr19:16244849-16244850(+) m6A 5'UTR       24284625 chr19:16244878-16244879(+) m6A 5'UTR       24284625 chr19:16254506-16254507(+) m6A 5'UTR//exon       - chr19:16254519-16254520(+) m6A 5'UTR//exon       - chr19:16259606-16259607(+) m6A CDS//intron       - chr19:16266566-16266567(+) m6A 3'UTR//intron       - chr19:16268080-16268081(+) m6A 3'UTR//CDS       - chr19:16268139-16268140(+) m6A 3'UTR//CDS       - chr19:16268150-16268151(+) m6A 3'UTR//CDS       - chr19:16268231-16268232(+) m6A 3'UTR//CDS       25456834 chr19:16268284-16268285(+) m6A 3'UTR//CDS       25456834 chr19:16268330-16268331(+) m6A 3'UTR//CDS       25456834 chr19:16268399-16268400(+) m6A 3'UTR//CDS       25456834//27371828 chr19:16268462-16268463(+) m6A 3'UTR//CDS       25456834//27371828 chr19:16268608-16268609(+) m6A 3'UTR       25456834 chr19:16268630-16268631(+) m6A 3'UTR       25456834 chr19:16268715-16268716(+) m6A 3'UTR       - chr19:16268852-16268853(+) m6A 3'UTR       - chr19:16268925-16268926(+) m6A 3'UTR       - chr19:16269265-16269266(+) m6A 3'UTR       - chr19:16269334-16269335(+) m6A 3'UTR       -

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	hsa-miR-3182	Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     - Microvesicle Cell lines(GBM46|GBM8|HaCaT|K562|MCF-10A|MCF-7|MGG75)|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocytes     -
	HSH2D	Exosome Blood     -

Interaction Network (The top 100 interactions):

Interactor1: hsa-miR-3182
Interactor2: HSH2D

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRDB//miRTarBase//miRWalk//Targetscan
Support Database	ViRBase

References:

PMID	32232013	Target region	None
Source	ViRBase	Interactor1 expression	None
Tissue or cell line	HUVEC cells	Interactor2 expression	Upregulation
Description	Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).