Detail Information

Basic Information:


  VIRBase ID:  

HHID00024994

  Virus:  

Hantaan orthohantavirus (Hantaan virus 76-118)

  Host:  

Homo sapiens

  Confidence Score:  

0.6040

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      hsa-miR-330-5p:           GOLM1:      

      *It may take a few minutes to display results.

Interactor Information:


Interactor1 Interactor2
Symbol hsa-miR-330-5p GOLM1
miRBase
Accession/Entrez ID		 MIMAT0004693 51280
Organism Homo sapiens Homo sapiens
Category miRNA mRNA
Alias - bA379P1.3//C9orf155//GOLPH2//GP73//HEL46//PSEC0257

ncRNA SNP information:


Resource Symbol SNP ID SNP Position Ref/Alt
miRNASNP-v3 hsa-miR-330-5p
rs1349824380 chr19:45639070    A/G
rs1359949384 chr19:45639062    G/A
rs760888385 chr19:45639051    C/G
rs761051145 chr19:45639055    GAC/G
rs1450351295 chr19:45639066    A/T
rs562108564 chr19:45639069    G/T
rs768769902 chr19:45639068    A/G

RNA Editing:


Resource Symbol Editing Position Change Genetic Region
RADAR GOLM1
chr9:88681967(-) A-I      intronic
chr9:88681979(-) A-I      intronic
chr9:88681983(-) A-I      intronic
chr9:88685338(-) A-I      intronic
chr9:88686181(-) A-I      intronic
chr9:88643793(-) A-I      intronic
chr9:88643884(-) A-I      intronic
chr9:88643902(-) A-I      intronic
chr9:88646377(-) A-I      intronic
chr9:88646378(-) A-I      intronic
chr9:88646379(-) A-I      intronic
chr9:88710236(-) A-I      intronic
chr9:88710257(-) A-I      intronic
chr9:88685003(-) A-I      intronic
chr9:88685315(-) A-I      intronic
chr9:88709601(-) A-I      intronic
chr9:88710220(-) A-I      intronic
chr9:88682021(-) A-I      intronic
chr9:88710222(-) A-I      intronic
chr9:88685403(-) A-I      intronic
chr9:88709600(-) A-I      intronic
chr9:88646485(-) A-I      intronic
chr9:88686232(-) A-I      intronic
chr9:88682015(-) A-I      intronic
chr9:88696232(-) A-I      intronic
chr9:88686170(-) A-I      intronic
chr9:88681966(-) A-I      intronic
chr9:88646380(-) A-I      intronic
chr9:88641222(-) A-I      3'UTR
chr9:88641413(-) A-I      3'UTR
chr9:88641244(-) A-I      3'UTR
chr9:88641431(-) A-I      3'UTR
chr9:88641386(-) A-I      3'UTR
chr9:88641424(-) A-I      3'UTR
chr9:88641895(-) A-I      3'UTR
chr9:88641227(-) A-I      3'UTR
chr9:88641230(-) A-I      3'UTR
chr9:88641183(-) A-I      3'UTR
chr9:88641243(-) A-I      3'UTR
chr9:88641428(-) A-I      3'UTR
chr9:88646541(-) A-I      intronic
chr9:88645086(-) A-I      intronic
chr9:88686055(-) A-I      intronic
chr9:88684895(-) A-I      intronic
chr9:88685324(-) A-I      intronic
chr9:88682858(-) A-I      intronic
chr9:88685241(-) A-I      intronic
chr9:88684978(-) A-I      intronic
chr9:88645128(-) A-I      intronic
chr9:88682113(-) A-I      intronic
chr9:88710390(-) A-I      intronic
chr9:88682067(-) A-I      intronic
chr9:88643836(-) A-I      intronic
chr9:88644961(-) A-I      intronic
chr9:88685365(-) A-I      intronic
chr9:88685321(-) A-I      intronic
chr9:88646001(-) A-I      intronic
chr9:88646655(-) A-I      intronic
chr9:88643824(-) A-I      intronic
chr9:88682761(-) A-I      intronic
chr9:88686574(-) A-I      intronic
chr9:88684832(-) A-I      intronic
chr9:88673445(-) A-I      intronic
chr9:88684970(-) A-I      intronic
chr9:88644045(-) A-I      intronic
chr9:88646003(-) A-I      intronic
chr9:88684833(-) A-I      intronic
chr9:88645940(-) A-I      intronic
chr9:88696639(-) A-I      intronic
chr9:88643869(-) A-I      intronic
chr9:88697108(-) A-I      intronic
chr9:88660331(-) A-I      intronic
chr9:88643936(-) A-I      intronic
chr9:88673548(-) A-I      intronic
chr9:88698424(-) A-I      intronic
chr9:88673489(-) A-I      intronic
chr9:88682119(-) A-I      intronic
chr9:88646578(-) A-I      intronic
chr9:88673527(-) A-I      intronic
chr9:88643928(-) A-I      intronic
chr9:88671594(-) A-I      intronic
chr9:88686137(-) A-I      intronic
chr9:88673448(-) A-I      intronic
chr9:88682135(-) A-I      intronic
chr9:88646404(-) A-I      intronic
chr9:88643978(-) A-I      intronic
chr9:88647211(-) A-I      intronic
chr9:88671489(-) A-I      intronic
chr9:88684896(-) A-I      intronic
chr9:88671603(-) A-I      intronic
chr9:88699778(-) A-I      intronic
Resource Symbol Editing Position Change SeqReg exReg PMID
DARNED GOLM1
chr9:88643953(-) A-I intron -    21960545
chr9:88682135(-) A-I intron -    21960545
chr9:88671594(-) A-G intron -    22484847

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase GOLM1
chr9:88641362-88641363(-) m6A 3'UTR       27773535
chr9:88641379-88641380(-) m6A 3'UTR       27773535
chr9:88641871-88641872(-) m6A 3'UTR       26404942//27773535
chr9:88641948-88641949(-) m6A 3'UTR       24981863//26404942//27773535
chr9:88642053-88642054(-) m6A 3'UTR       27773535
chr9:88642347-88642348(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535
chr9:88642354-88642355(-) m6A 3'UTR       24284625//24209618//24981863//26404942//27773535
chr9:88642464-88642465(-) m6A 3'UTR       24284625//24209618//27773535
chr9:88642470-88642471(-) m6A 3'UTR       24284625//24209618//27773535
chr9:88642556-88642557(-) m6A 3'UTR       24209618//24981863//27773535//22608085
chr9:88642652-88642653(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:88642666-88642667(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:88642725-88642726(-) m6A 3'UTR       24284625//24209618//24981863//27773535//22608085
chr9:88642780-88642781(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr9:88648204-88648205(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//22608085
chr9:88648241-88648242(-) m6A CDS       24284625//24209618//24981863//27773535//27371828//27773536//22608085
chr9:88648293-88648294(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22608085
chr9:88648303-88648304(-) m6A CDS       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88650313-88650314(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88650335-88650336(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88650402-88650403(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88650412-88650413(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88650452-88650453(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88650494-88650495(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88650534-88650535(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88651275-88651276(-) m6A CDS//exon       24284625//24209618//25456834//24981863//27773535//27371828//27773536//22575960
chr9:88651316-88651317(-) m6A CDS//exon       24284625//24209618//24981863//27773535//27371828//27773536//22575960
chr9:88655659-88655660(-) m6A 3'UTR//CDS//exon       24981863//27773535//22575960
chr9:88655672-88655673(-) m6A 3'UTR//CDS//exon       24981863//27773535//22575960
chr9:88655684-88655685(-) m6A 3'UTR//CDS//exon       24981863//27773535//22575960
chr9:88655746-88655747(-) m6A 3'UTR//CDS//exon       24981863//27773535//22575960
chr9:88661415-88661416(-) m6A 3'UTR//CDS//exon       27773535
chr9:88661420-88661421(-) m6A 3'UTR//CDS//exon       27773535
chr9:88661475-88661476(-) m6A 3'UTR//CDS//exon       27773535//22575960
chr9:88692828-88692829(-) m6A exon//intron       27773536
chr9:88694609-88694610(-) m6A 5'UTR//intron       27773536
chr9:88694642-88694643(-) m6A 5'UTR//intron       24981863//27773536
chr9:88714946-88714947(-) m6A 5'UTR//exon       24981863//26404942
chr9:88715018-88715019(-) m6A 5'UTR//exon       24981863//26404942
chr9:88715023-88715024(-) m6A 5'UTR//exon       24981863//26404942

RNA Localization:


Resource Symbol Subcellular Localization Tissue or Cell Line PMID
RNALocate hsa-miR-330-5p
Exosome HCC tissues     30542726
Exosome Plasma     23663360
Exosome Breast milk|Cell lines|Epididymal epithelial cells|Osteoblast|Plasma|Primary glioblastoma neurosphere cells|Primary keratinocyte|Saliva|Serum|Urine     -
Microvesicle Blood|Colon cancer cell line (LIM1863)|Fibroblasts|Mesenchymal stem cells     -
GOLM1
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytoplasm Nasopharyngeal carcinoma cells     20498841
Cytosol Human myelogenous leukemia cell line (K-562)     21613539
Exosome Blood     -
Nucleus Nasopharyngeal carcinoma cells     20498841
Nucleus Nasopharyngeal carcinoma cells     20498841
Ribosome Colon cancer cells     24393600

Related Drug Information:


Resource Symbol Drug Name PubChem
ID		 Function Link  
RNAInter hsa-miR-330-5p
D-Glucose 5793 Drug interaction    RC00007082
Mistletoe lectin-I - Drug interaction    RC00007083
Resource Symbol Drug Name PubChem ID PMID
NoncoRNA hsa-miR-330-5p
Etoposide 36462       23028896

Interaction Network (The top 100 interactions):


Interactor1: hsa-miR-330-5p
Interactor2: GOLM1

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRDB//miRTarBase//miRWalk//Targetscan
Support Database ViRBase

References:


PMID 32232013 Target region None
Source ViRBase Interactor1 expression None
Tissue or cell line HUVEC cells Interactor2 expression Upregulation
Description Then we predicted 320 target genes of these 16 DE miRNAs and constructed a miRNA-mRNA interaction network (Figure 5B, Table S5).

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