Basic Information:
VIRBase ID:
HHID00023474
Virus:
Zika virus (strain RIO-U1,ZIKV)
Host:
Homo sapiens
Confidence Score:
0.6775
Interaction Type:
Host-Host interaction
Predicted Binding:
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Interactor Information:
|
Interactor1 |
Interactor2 |
Symbol |
hsa-miR-222-5p |
DDX58 |
miRBase Accession/Entrez ID |
MIMAT0004569 |
23586 |
Organism |
Homo sapiens |
Homo sapiens |
Category |
miRNA |
mRNA |
Alias |
-
|
RIG-I//RIG1//RIGI//RLR-1//SGMRT2
|
ncRNA SNP information:
Resource |
Symbol |
SNP ID |
SNP Position |
Ref/Alt |
miRNASNP-v3 |
hsa-miR-222-5p |
|
RNA Editing:
Resource |
Symbol |
Editing Position |
Change |
Genetic Region |
RADAR |
DDX58 |
|
Resource |
Symbol |
Editing Position |
Change |
SeqReg |
exReg |
PMID |
DARNED |
DDX58 |
|
RNA Modification:
Resource |
Symbol |
ModificationPosition |
Type |
Genomic Context |
PMID |
RMBase |
DDX58 |
|
RNA Localization:
Resource |
Symbol |
Subcellular Localization |
Tissue or Cell Line |
PMID |
RNALocate |
hsa-miR-222-5p |
|
DDX58 |
|
Interaction Network (The top 100 interactions):
Interactor1: hsa-miR-222-5p |
|
Interactor2: DDX58 |
|
Evidence Support:
Weak-Evidence |
RNA-Seq//Small RNA sequencing |
Prediction-Evidence |
DIANA//miRanda//PicTar//Targetscan |
Support Database |
ViRBase
|
References:
PMID |
31992777 |
Target region |
None |
Source |
ViRBase
|
Interactor1 expression |
Downregulation |
Tissue or cell line |
TEC cells |
Interactor2 expression |
None |
Description |
The microRNA-target network (Fig. 4b,c) revealed 13 upregulated microRNAs that can modulate the expression of 12 downregulated target transcripts. |