Basic Information:

  VIRBase ID:  

HHID00023191

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-7689-3p:  MIMAT0029909          Tmem106a:  NM_001359325     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-7689-3p	Tmem106a
miRBase Accession/Entrez ID	MIMAT0029909	217203
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	0610008L10Rik//AI043106//BC022145

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Tmem106a	chr11:101590400-101590401(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr11:101590412-101590413(+) m6A CDS//exon       25683224//25412662//24981863//25569111 chr11:101590471-101590472(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr11:101590526-101590527(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr11:101590535-101590536(+) m6A 3'UTR//exon       25683224//25456834//25412662//24981863//25569111 chr11:101590634-101590635(+) m6A 3'UTR//exon       25683224//25412662//24981863//25569111 chr11:101590721-101590722(+) m6A 3'UTR//exon       25569111 chr11:101590798-101590799(+) m6A 3'UTR       25569111 chr11:101591047-101591048(+) m6A 3'UTR       24981863 chr11:101591061-101591062(+) m6A 3'UTR       24981863 chr11:101591091-101591092(+) m6A 3'UTR       24981863 chr11:101591110-101591111(+) m6A 3'UTR       24981863 chr11:101591218-101591219(+) m6A 3'UTR       24981863 chr11:101591265-101591266(+) m6A 3'UTR       24981863 chr11:101591521-101591522(+) m6A 3'UTR       25683224//24981863 chr11:101591695-101591696(+) m6A 3'UTR       24981863 chr11:101591705-101591706(+) m6A 3'UTR       24981863 chr11:101591740-101591741(+) m6A 3'UTR       24981863

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-7689-3p
Interactor2: Tmem106a

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).