Basic Information:

  VIRBase ID:  

HHID00022952

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-5129-3p:  MIMAT0022987          Trim56:  NM_201373     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-5129-3p	Trim56
miRBase Accession/Entrez ID	MIMAT0022987	384309
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	A130009K11Rik//Gm452//RNF1//RNF109

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Trim56	chr5:137105797-137105798(-) m6A 3'UTR       24981863 chr5:137105844-137105845(-) m6A 3'UTR       24981863//25569111 chr5:137105855-137105856(-) m6A 3'UTR       24981863//25569111 chr5:137105871-137105872(-) m6A 3'UTR       24981863//25569111 chr5:137105996-137105997(-) m6A 3'UTR       24981863 chr5:137108074-137108075(-) m6A 3'UTR       25683224 chr5:137108115-137108116(-) m6A 3'UTR       25683224 chr5:137108565-137108566(-) m6A 3'UTR       24981863 chr5:137108613-137108614(-) m6A 3'UTR       24981863 chr5:137108646-137108647(-) m6A 3'UTR       24981863 chr5:137108696-137108697(-) m6A 3'UTR       24981863 chr5:137108708-137108709(-) m6A 3'UTR       24981863 chr5:137108764-137108765(-) m6A 3'UTR       24981863 chr5:137108788-137108789(-) m6A 3'UTR       24981863 chr5:137109367-137109368(-) m6A 3'UTR       24981863 chr5:137109409-137109410(-) m6A 3'UTR       24981863 chr5:137109862-137109863(-) m6A 3'UTR       24981863 chr5:137109870-137109871(-) m6A 3'UTR       24981863 chr5:137109998-137109999(-) m6A 3'UTR       24981863 chr5:137110166-137110167(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137110221-137110222(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137110300-137110301(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137110475-137110476(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137110538-137110539(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137110570-137110571(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137110665-137110666(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137110687-137110688(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137110776-137110777(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137110788-137110789(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137110816-137110817(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137110865-137110866(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137110917-137110918(-) m6A 3'UTR       25683224//25456834//24981863//25569111 chr5:137111007-137111008(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137111012-137111013(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137111044-137111045(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr5:137111155-137111156(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137111219-137111220(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137111261-137111262(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137111288-137111289(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137111474-137111475(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137111508-137111509(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137111540-137111541(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137111560-137111561(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137111608-137111609(-) m6A 3'UTR       25683224//25412662//24981863//25569111 chr5:137111673-137111674(-) m6A 3'UTR       25683224//24981863//25569111 chr5:137111678-137111679(-) m6A 3'UTR       25683224//24981863//25569111 chr5:137111683-137111684(-) m6A 3'UTR       25683224//24981863//25569111 chr5:137112029-137112030(-) m6A 3'UTR       25683224//24981863//25412662//25569111 chr5:137112044-137112045(-) m6A 3'UTR       25683224//24981863//25412662//25569111 chr5:137112070-137112071(-) m6A 3'UTR       25683224//24981863//25412662//25569111 chr5:137112093-137112094(-) m6A 3'UTR       25683224//25569111 chr5:137112176-137112177(-) m6A 3'UTR       25569111 chr5:137112191-137112192(-) m6A 3'UTR       25569111 chr5:137112921-137112922(-) m6A CDS       25683224//24981863//25569111 chr5:137113016-137113017(-) m6A CDS       25683224//25412662//24981863//25569111 chr5:137113107-137113108(-) m6A CDS       25683224//25412662//24981863//25569111 chr5:137113140-137113141(-) m6A CDS       25683224//25412662//24981863//25569111 chr5:137113187-137113188(-) m6A CDS       25683224//25412662//24981863//25569111 chr5:137113212-137113213(-) m6A CDS       25683224//25412662//24981863//25569111 chr5:137113281-137113282(-) m6A CDS       25683224//25412662//24981863//25569111 chr5:137113398-137113399(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137113404-137113405(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137113459-137113460(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137113524-137113525(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137113538-137113539(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137113575-137113576(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137113581-137113582(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137113835-137113836(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137113903-137113904(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr5:137113989-137113990(-) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr5:137114239-137114240(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr5:137114295-137114296(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr5:137114318-137114319(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr5:137114437-137114438(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr5:137114514-137114515(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr5:137114532-137114533(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr5:137114563-137114564(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr5:137114646-137114647(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr5:137114655-137114656(-) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr5:137114795-137114796(-) m6A 5'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr5:137114842-137114843(-) m6A 5'UTR       25683224//25456834//24981863//25569111 chr5:137114860-137114861(-) m6A 5'UTR       25683224//25456834//24981863//25569111

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-5129-3p
Interactor2: Trim56

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).