Basic Information:

  VIRBase ID:  

HHID00022951

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-5129-3p:  MIMAT0022987          Arid5a:  NM_145996     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-5129-3p	Arid5a
miRBase Accession/Entrez ID	MIMAT0022987	214855
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	D430024K22Rik//Mrf//Mrf1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Arid5a	chr1:36307774-36307775(+) m6A 5'UTR//exon       25683224//25412662//24981863//25569111 chr1:36316133-36316134(+) m6A exon//intron       24981863 chr1:36316229-36316230(+) m6A CDS//exon//intron       25683224//25412662//24981863//25569111 chr1:36316336-36316337(+) m6A exon//intron       25683224//25412662//24981863//25569111 chr1:36316380-36316381(+) m6A exon//intron       25683224//25412662 chr1:36316387-36316388(+) m6A exon//intron       25683224 chr1:36316410-36316411(+) m6A exon//intron       25683224 chr1:36318599-36318600(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111 chr1:36318617-36318618(+) m1A 3'UTR//CDS//exon       26863196 chr1:36318627-36318628(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111 chr1:36319006-36319007(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111 chr1:36319030-36319031(+) m6A 3'UTR//CDS//exon       25683224//25412662//24981863//25569111 chr1:36319061-36319062(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:36319071-36319072(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:36319092-36319093(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:36319206-36319207(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:36319289-36319290(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:36319298-36319299(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:36319310-36319311(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:36319331-36319332(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:36319338-36319339(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:36319470-36319471(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:36319493-36319494(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:36319514-36319515(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111 chr1:36319530-36319531(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111 chr1:36319650-36319651(+) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111 chr1:36319788-36319789(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:36319834-36319835(+) m6A 3'UTR//CDS//exon       25683224//25456834//25412662//24981863//25569111 chr1:36319946-36319947(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:36319964-36319965(+) m6A 3'UTR//CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr1:36320115-36320116(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr1:36320196-36320197(+) m6A 3'UTR//CDS       25683224//25456834//24981863//25569111//22608085 chr1:36320330-36320331(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:36320388-36320389(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:36320494-36320495(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:36320507-36320508(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:36320681-36320682(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr1:36320705-36320706(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr1:36320803-36320804(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111 chr1:36320939-36320940(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:36320985-36320986(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:36320998-36320999(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr1:36321034-36321035(+) m6A 3'UTR       25456834//24981863//25569111//22608085 chr1:36321065-36321066(+) m6A 3'UTR       25456834//24981863//25569111 chr1:36321159-36321160(+) m6A 3'UTR       24981863//25569111 chr1:36321267-36321268(+) m6A 3'UTR       25456834//24981863//25569111 chr1:36321296-36321297(+) m6A 3'UTR       25456834//24981863//25569111 chr1:36321345-36321346(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr1:36321408-36321409(+) m6A 3'UTR       25456834//24981863//25569111 chr1:36321497-36321498(+) m6A 3'UTR       24981863//25569111 chr1:36321576-36321577(+) m6A 3'UTR       25683224//24981863 chr1:36321594-36321595(+) m6A 3'UTR       25683224//24981863 chr1:36322918-36322919(+) m6A 3'UTR       24981863 chr1:36323024-36323025(+) m6A 3'UTR       25569111 chr1:36323031-36323032(+) m6A 3'UTR       25569111 chr1:36323648-36323649(+) m6A 3'UTR       24981863 chr1:36323656-36323657(+) m6A 3'UTR       24981863 chr1:36323744-36323745(+) m6A 3'UTR       24981863

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-5129-3p
Interactor2: Arid5a

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).