Basic Information:

  VIRBase ID:  

HHID00022739

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-490-5p:  MIMAT0017261          P2rx7:  NM_001284402     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-490-5p	P2rx7
miRBase Accession/Entrez ID	MIMAT0017261	18439
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	AI467586//P2X//P2X(7//P2X(7)//P2X7R

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	P2rx7	chr5:122647548-122647549(+) m6A exon//intron       24981863 chr5:122647570-122647571(+) m6A exon//intron       24981863 chr5:122647575-122647576(+) m6A exon//intron       24981863 chr5:122647604-122647605(+) m6A exon//intron       24981863 chr5:122680819-122680820(+) m6A CDS//exon//intron       24981863 chr5:122680877-122680878(+) m6A CDS//exon//intron       24981863 chr5:122680930-122680931(+) m6A CDS//exon//intron       24981863 chr5:122681200-122681201(+) m6A CDS//exon//intron       24981863 chr5:122681265-122681266(+) m6A CDS//exon//intron       25683224//25456834//24981863//22608085 chr5:122681355-122681356(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//22608085 chr5:122681363-122681364(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//22608085 chr5:122681384-122681385(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085 chr5:122681433-122681434(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085 chr5:122681452-122681453(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085 chr5:122681474-122681475(+) m6A 3'UTR//intron       25683224//25456834//24981863//22608085 chr5:122681585-122681586(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111 chr5:122681667-122681668(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111 chr5:122681672-122681673(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111 chr5:122681753-122681754(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr5:122681864-122681865(+) m6A 3'UTR//intron       25683224//24981863 chr5:122682034-122682035(+) m6A 3'UTR//intron       25683224//25456834//24981863//25412662//25569111//22608085 chr5:122682047-122682048(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr5:122682081-122682082(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085//22575960 chr5:122682149-122682150(+) m6A 3'UTR//intron       25683224//25456834//24981863//25569111//22608085 chr5:122682235-122682236(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085 chr5:122682323-122682324(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//22608085 chr5:122682364-122682365(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//22608085 chr5:122682488-122682489(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863 chr5:122682593-122682594(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085 chr5:122682603-122682604(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085 chr5:122682609-122682610(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085 chr5:122682652-122682653(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111//22608085 chr5:122682715-122682716(+) m6A 3'UTR//exon//intron       25683224//25456834//24981863//25569111 chr5:122682818-122682819(+) m6A 3'UTR//exon//intron       25683224//24981863 chr5:122682945-122682946(+) m6A 3'UTR//exon//intron       24981863 chr5:122682978-122682979(+) m6A 3'UTR//exon//intron       24981863 chr5:122683098-122683099(+) m6A 3'UTR//exon//intron       24981863 chr5:122683112-122683113(+) m6A 3'UTR//exon//intron       24981863 chr5:122683174-122683175(+) m6A 3'UTR//CDS//exon//intron       25683224//24981863 chr5:122683198-122683199(+) m6A 3'UTR//exon//intron       25683224//24981863 chr5:122683204-122683205(+) m6A 3'UTR//exon//intron       25683224//24981863 chr5:122683241-122683242(+) m6A 3'UTR//exon//intron       25683224//24981863 chr5:122683438-122683439(+) m6A 3'UTR//exon//intron       25683224//24981863 chr5:122683865-122683866(+) m6A 3'UTR//exon//intron       25683224//25456834

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	P2rx7	Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755 Nucleus Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-490-5p
Interactor2: P2rx7

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).