Basic Information:

  VIRBase ID:  

HHID00022086

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-504-5p:  MIMAT0004889          Tnfsf10:  NM_009425     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-504-5p	Tnfsf10
miRBase Accession/Entrez ID	MIMAT0004889	22035
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	A330042I21Rik//AI448571//AP//APO-2L//Ly81//T//TL2//Tnlg6a//Trail

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Tnfsf10	chr3:27335364-27335365(+) m6A CDS       24981863 chr3:27335416-27335417(+) m6A CDS       24981863 chr3:27335427-27335428(+) m6A CDS//intron       24981863//22608085 chr3:27335432-27335433(+) m6A CDS//intron       24981863//22608085 chr3:27335503-27335504(+) m6A CDS//intron       25456834//24981863//22608085//22575960 chr3:27335534-27335535(+) m6A CDS//intron       25456834//24981863//22608085//22575960 chr3:27335609-27335610(+) m6A CDS//intron       25456834//24981863//22608085//22575960 chr3:27335620-27335621(+) m6A CDS//intron       25456834//24981863//22608085//22575960 chr3:27335685-27335686(+) m6A 3'UTR//intron       25456834//24981863//22608085//22575960 chr3:27335745-27335746(+) m6A 3'UTR//intron       25456834//24981863//22608085//22575960 chr3:27335774-27335775(+) m6A 3'UTR//intron       25456834//24981863//22608085//22575960 chr3:27335782-27335783(+) m6A 3'UTR//intron       25456834//24981863//22608085//22575960 chr3:27335808-27335809(+) m6A 3'UTR//intron       25456834//24981863//22608085//22575960 chr3:27335842-27335843(+) m6A 3'UTR//intron       24981863//22608085//22575960 chr3:27335866-27335867(+) m6A 3'UTR//intron       24981863//22608085//22575960

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-504-5p	Exosome B6 BMDCs     22031862

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-504-5p
Interactor2: Tnfsf10

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).