Detail

Basic Information:

VIRBase ID:

HHID00022084

Virus:

Japanese encephalitis virus (P3 strain)

Host:

Mus musculus

Confidence Score:

0.5711

Interaction Type:

Host-Host interaction

Predicted Binding:

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-504-5p	Tnf
miRBase Accession/Entrez ID	MIMAT0004889	21926
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	DI//DIF//Tn//TNF-//TNF-a//TNF-alpha//Tnfa//TNFalpha//Tnfs//Tnfsf1a//TNFSF2//Tnlg1f

RNA Modification:

Resource

Symbol

ModificationPosition

Type

Genomic Context

PMID

RMBase

Tnf

chr17:35199786-35199787(-)	m6A	3'UTR	24981863
chr17:35199915-35199916(-)	m6A	3'UTR	24981863
chr17:35199946-35199947(-)	m6A	3'UTR	24981863
chr17:35199958-35199959(-)	m6A	3'UTR	24981863
chr17:35199973-35199974(-)	m6A	3'UTR	24981863
chr17:35200190-35200191(-)	m6A	CDS	24981863
chr17:35200229-35200230(-)	m6A	CDS	24981863
chr17:35200282-35200283(-)	m6A	CDS	24981863
chr17:35200307-35200308(-)	m6A	CDS	24981863
chr17:35200417-35200418(-)	m6A	CDS	24981863
chr17:35200481-35200482(-)	m6A	CDS	24981863
chr17:35200559-35200560(-)	m6A	CDS	24981863
chr17:35201807-35201808(-)	m6A	CDS	24981863
chr17:35201844-35201845(-)	m6A	5'UTR	24981863
chr17:35201943-35201944(-)	m6A	5'UTR	24981863
chr17:35201951-35201952(-)	m6A	5'UTR	24981863
chr17:35201957-35201958(-)	m6A	5'UTR	24981863
chr17:35201974-35201975(-)	m6A	5'UTR	24981863
chr17:35201984-35201985(-)	m6A	5'UTR	24981863

RNA Localization:

Resource

Symbol

Subcellular Localization

Tissue or Cell Line

PMID

RNALocate

mmu-miR-504-5p

Exosome

B6 BMDCs

22031862

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-504-5p

Interactor2: Tnf

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).