Basic Information:

  VIRBase ID:  

HHID00022073

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-504-5p:  MIMAT0004889          Mcl1:  NM_008562     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-504-5p	Mcl1
miRBase Accession/Entrez ID	MIMAT0004889	17210
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	AW556805//Mcl-//Mcl-1

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Mcl1	chr3:95658893-95658894(+) m6A CDS       25683224//25412662//24981863//25569111 chr3:95659055-95659056(+) m6A CDS       25683224//25412662//24981863//25569111 chr3:95659173-95659174(+) m6A CDS       25683224//25412662//24981863//25569111 chr3:95659382-95659383(+) m6A CDS       25683224//25456834//25412662//24981863//25569111 chr3:95659432-95659433(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085 chr3:95659773-95659774(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659778-95659779(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659850-95659851(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659899-95659900(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659916-95659917(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659935-95659936(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659948-95659949(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659982-95659983(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95659995-95659996(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95660737-95660738(+) m6A CDS       25683224//25456834//24981863//25569111//22608085//22575960 chr3:95660843-95660844(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr3:95660866-95660867(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr3:95660885-95660886(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95660907-95660908(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95661066-95661067(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95661089-95661090(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr3:95661374-95661375(+) m6A 3'UTR       24981863//25569111//22608085 chr3:95661479-95661480(+) m6A 3'UTR       25569111//22608085 chr3:95661484-95661485(+) m6A 3'UTR       25569111//22608085 chr3:95661568-95661569(+) m6A 3'UTR       25569111//22608085 chr3:95661663-95661664(+) m6A 3'UTR       25569111//22608085 chr3:95661711-95661712(+) m6A 3'UTR       25569111//22608085 chr3:95662634-95662635(+) m6A 3'UTR       22608085 chr3:95662663-95662664(+) m6A 3'UTR       22608085 chr3:95662780-95662781(+) m6A 3'UTR       24981863//22608085 chr3:95662820-95662821(+) m6A 3'UTR       25412662//24981863//22608085 chr3:95662992-95662993(+) m6A 3'UTR       25412662//22608085

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-504-5p	Exosome B6 BMDCs     22031862

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-504-5p
Interactor2: Mcl1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).