Detail Information

Basic Information:


  VIRBase ID:  

HHID00021987

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-879-5p:           Nfkb1:      

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Interactor Information:


Interactor1 Interactor2
Symbol mmu-miR-879-5p Nfkb1
miRBase
Accession/Entrez ID		 MIMAT0004842 18033
Organism Mus musculus Mus musculus
Category miRNA mRNA
Alias - NF-k//NF-kappaB//NF-kappaB1//NF-KB1//p105//p5//p50//p50/p1//p50/p105

RNA Modification:


Resource Symbol ModificationPosition Type Genomic Context PMID
RMBase Nfkb1
chr3:135584894-135584895(-) m6A 3'UTR//exon       25569111
chr3:135584936-135584937(-) m6A 3'UTR//exon       25569111
chr3:135585324-135585325(-) m6A 3'UTR//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr3:135585375-135585376(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr3:135585406-135585407(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr3:135585427-135585428(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr3:135585456-135585457(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085//22575960
chr3:135585470-135585471(-) m6A 3'UTR//CDS//exon       25683224//25456834//24981863//25569111//22608085
chr3:135585510-135585511(-) m6A 3'UTR//CDS//exon       25412662//24981863//25569111//22608085
chr3:135591656-135591657(-) m6A 3'UTR//CDS//exon       25412662//25569111//22608085
chr3:135591671-135591672(-) m6A 3'UTR//CDS//exon       25412662//25569111//22608085
chr3:135593855-135593856(-) m6A 3'UTR//CDS//exon       25412662//25569111//22608085
chr3:135593896-135593897(-) m6A 3'UTR//CDS//exon       25412662//25569111
chr3:135593916-135593917(-) m6A 3'UTR//CDS//exon       25412662//25569111
chr3:135594937-135594938(-) m6A 3'UTR//CDS//exon       25412662
chr3:135594980-135594981(-) m6A 3'UTR//CDS//exon       25412662
chr3:135602763-135602764(-) m6A exon//intron       24981863
chr3:135603693-135603694(-) m6A exon//intron       25412662
chr3:135603712-135603713(-) m6A 3'UTR//CDS//exon       25412662
chr3:135613933-135613934(-) Y CDS//exon       26075521
chr3:135615308-135615309(-) m6A 3'UTR//CDS//exon       25412662//22608085
chr3:135615375-135615376(-) m6A 3'UTR//CDS//exon       25412662//22608085
chr3:135615388-135615389(-) m6A 3'UTR//CDS//exon       25412662
chr3:135618004-135618005(-) m6A exon//intron       25412662
chr3:135618041-135618042(-) m6A exon//intron       25412662
chr3:135653919-135653920(-) m6A intron       25683224
chr3:135653954-135653955(-) m6A intron       25683224

Interaction Network (The top 100 interactions):


Interactor1: mmu-miR-879-5p
Interactor2: Nfkb1

Evidence Support:


Weak-Evidence RNA-Seq
Prediction-Evidence miRanda
Support Database ViRBase

References:


PMID 32552669 Target region None
Source ViRBase Interactor1 expression Downregulation
Tissue or cell line Mice brain tissues Interactor2 expression None
Description The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).

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