Basic Information:

  VIRBase ID:  

HHID00021985

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-879-5p:  MIMAT0004842          Mdfic:  NM_175088     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-879-5p	Mdfic
miRBase Accession/Entrez ID	MIMAT0004842	16543
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	Kdt1//Mdfid

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Mdfic	chr6:15720932-15720933(+) m6A 5'UTR//CDS       25683224//25412662//24981863//25569111 chr6:15720939-15720940(+) m6A 5'UTR//CDS       25683224//25412662//24981863//25569111 chr6:15721148-15721149(+) m6A 5'UTR//intron       25412662//24981863 chr6:15727858-15727859(+) m6A 5'UTR//intron       24981863 chr6:15727896-15727897(+) m6A 5'UTR//intron       24981863 chr6:15727953-15727954(+) m6A 5'UTR//intron       24981863 chr6:15727997-15727998(+) m6A CDS//intron       24981863 chr6:15728004-15728005(+) m6A CDS//intron       24981863 chr6:15728049-15728050(+) m6A CDS//intron       24981863 chr6:15729035-15729036(+) m6A CDS//intron       24981863 chr6:15738387-15738388(+) m6A 3'UTR//intron       24981863//25412662 chr6:15738424-15738425(+) m6A 3'UTR//intron       24981863//25412662//25569111 chr6:15738429-15738430(+) m6A 3'UTR//intron       24981863//25412662//25569111 chr6:15738437-15738438(+) m6A 3'UTR//intron       24981863//25412662//25569111 chr6:15741065-15741066(+) m6A 3'UTR//CDS       25683224//22608085 chr6:15741099-15741100(+) m6A 3'UTR//CDS       25683224//25412662//22608085 chr6:15770242-15770243(+) m6A 3'UTR//CDS       25683224//25412662//22608085 chr6:15770256-15770257(+) m6A 3'UTR//CDS       25683224//25412662//22608085 chr6:15770272-15770273(+) m6A 3'UTR//CDS       25683224//25412662//24981863//22608085 chr6:15770340-15770341(+) m6A 3'UTR//CDS       25683224//25412662//24981863//22608085 chr6:15770423-15770424(+) m6A 3'UTR//CDS       25683224//25412662//24981863//25569111 chr6:15770501-15770502(+) m6A 3'UTR//CDS//intron       25683224//24981863//25569111 chr6:15770575-15770576(+) m6A 3'UTR//CDS//intron       25683224//24981863//25569111 chr6:15773266-15773267(+) m6A 3'UTR//intron       25456834//25569111 chr6:15799687-15799688(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr6:15799779-15799780(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr6:15799815-15799816(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr6:15799891-15799892(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr6:15799898-15799899(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr6:15799945-15799946(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:15799956-15799957(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:15799986-15799987(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085 chr6:15800081-15800082(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr6:15800110-15800111(+) m6A 3'UTR       25456834//24981863 chr6:15800203-15800204(+) m6A 3'UTR       25683224//25456834//24981863 chr6:15800272-15800273(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr6:15800300-15800301(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr6:15800319-15800320(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr6:15800330-15800331(+) m6A 3'UTR       25683224//25456834//24981863//25569111 chr6:15800466-15800467(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr6:15800495-15800496(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr6:15800520-15800521(+) m6A 3'UTR       25683224//25456834//24981863//25569111//22608085//22575960 chr6:15800590-15800591(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr6:15800635-15800636(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr6:15800651-15800652(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr6:15800702-15800703(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr6:15800774-15800775(+) m6A 3'UTR       25683224//24981863//25456834//25569111 chr6:15800820-15800821(+) m6A 3'UTR       24981863//25456834//25569111 chr6:15801052-15801053(+) m6A 3'UTR       25683224//25412662//25569111 chr6:15801166-15801167(+) m6A 3'UTR       25683224//25412662//24981863//25569111

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-879-5p
Interactor2: Mdfic

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).