Basic Information:

  VIRBase ID:  

HHID00021875

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-let-7a-1-3p:  MIMAT0004620          Cflar:  NR_149257     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-let-7a-1-3p	Cflar
miRBase Accession/Entrez ID	MIMAT0004620	12633
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	2310024N18Rik//A430105C05Rik//c-F//c-Flip//Ca//Cash//Casper//CLARP//F//FLAME//FLAME-1//Flip//Gm9845//I-FLICE//MRIT

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Cflar	chr1:58713459-58713460(+) m6A 5'UTR//exon//intron       24981863//25569111 chr1:58722483-58722484(+) m6A exon//intron       24981863 chr1:58722502-58722503(+) m6A exon//intron       24981863 chr1:58722561-58722562(+) m6A exon//intron       24981863 chr1:58722567-58722568(+) m6A exon//intron       24981863 chr1:58722605-58722606(+) m6A exon//intron       24981863 chr1:58722626-58722627(+) m6A exon//intron       24981863 chr1:58722654-58722655(+) m6A exon//intron       24981863 chr1:58723039-58723040(+) m6A exon//intron       24981863 chr1:58726402-58726403(+) m6A 5'UTR//exon       24981863 chr1:58726413-58726414(+) m6A 5'UTR//exon       24981863 chr1:58726434-58726435(+) m6A 5'UTR//exon       24981863 chr1:58726542-58726543(+) m6A CDS//exon       24981863 chr1:58726566-58726567(+) m6A CDS//exon       24981863 chr1:58731236-58731237(+) m6A CDS//exon       24981863 chr1:58731251-58731252(+) m6A CDS//exon       24981863 chr1:58731257-58731258(+) m6A CDS//exon       24981863 chr1:58752352-58752353(+) m6A CDS//exon       24981863 chr1:58752455-58752456(+) m6A CDS//exon       24981863//25569111//22608085 chr1:58752557-58752558(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:58752572-58752573(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:58752620-58752621(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:58752692-58752693(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:58752714-58752715(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr1:58753800-58753801(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:58753813-58753814(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:58753821-58753822(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:58753839-58753840(+) m6A CDS//exon       25683224//25456834//25412662//24981863//25569111//22608085 chr1:58753900-58753901(+) m6A CDS//exon       25456834//25412662//24981863//25569111//22608085 chr1:58753924-58753925(+) m6A 3'UTR//exon       25412662//24981863//25569111//22608085 chr1:58753931-58753932(+) m6A 3'UTR//exon       25412662//24981863//25569111//22608085 chr1:58754675-58754676(+) m6A 3'UTR       25412662 chr1:58754723-58754724(+) m6A 3'UTR       25412662 chr1:58755164-58755165(+) m6A 3'UTR       24981863 chr1:58755594-58755595(+) m6A 3'UTR       25412662 chr1:58755645-58755646(+) m6A 3'UTR       25412662 chr1:58755650-58755651(+) m6A 3'UTR       25412662 chr1:58755655-58755656(+) m6A 3'UTR       25412662 chr1:58755689-58755690(+) m6A 3'UTR       25412662 chr1:58755694-58755695(+) m6A 3'UTR       25412662 chr1:58756706-58756707(+) m6A 3'UTR       24981863 chr1:58756871-58756872(+) m6A 3'UTR       24981863 chr1:58756901-58756902(+) m6A 3'UTR       25412662//24981863 chr1:58756911-58756912(+) m6A 3'UTR       25412662//24981863 chr1:58756930-58756931(+) m6A 3'UTR       25412662//24981863 chr1:58757007-58757008(+) m6A 3'UTR       25412662//24981863//22608085 chr1:58758267-58758268(+) m6A 3'UTR       25683224//25412662//24981863 chr1:58758373-58758374(+) m6A 3'UTR       25683224//25412662 chr1:58758400-58758401(+) m6A 3'UTR       25683224//25412662

Interaction Network (The top 100 interactions):

Interactor1: mmu-let-7a-1-3p
Interactor2: Cflar

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).