Basic Information:

  VIRBase ID:  

HHID00021688

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-674-3p:  MIMAT0003741          Zfp36:  NM_011756     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-674-3p	Zfp36
miRBase Accession/Entrez ID	MIMAT0003741	22695
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	Gos24//Nup4//Nup475//Tis//Tis11//TIS11D//TISII//Tt//Ttp//Zfp-3//Zfp-36

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Zfp36	chr7:28377105-28377106(-) m6A 3'UTR       25412662//24981863 chr7:28377243-28377244(-) m6A 3'UTR       25412662 chr7:28377328-28377329(-) m6A 3'UTR       25412662//24981863//25456834//25569111 chr7:28377443-28377444(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22575960 chr7:28377484-28377485(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22575960 chr7:28377503-28377504(-) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//26404942//22575960 chr7:28377613-28377614(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr7:28377654-28377655(-) m6A CDS       25683224//25412662//24981863//25569111 chr7:28377810-28377811(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr7:28377829-28377830(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr7:28378029-28378030(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378106-28378107(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378145-28378146(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378210-28378211(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr7:28378225-28378226(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22575960 chr7:28378410-28378411(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378416-28378417(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378422-28378423(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378430-28378431(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378447-28378448(-) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr7:28378508-28378509(-) m6A 5'UTR//intron       25683224//25456834//25412662//24981863//25569111//22575960 chr7:28378582-28378583(-) m6A 5'UTR//intron       25683224//25456834//25412662//25569111 chr7:28378587-28378588(-) m6A 5'UTR//intron       25683224//25456834//25412662//25569111 chr7:28378595-28378596(-) m6A 5'UTR//intron       25683224//25456834//25412662//25569111 chr7:28378662-28378663(-) m6A 5'UTR//intron       25683224//25412662 chr7:28378727-28378728(-) m6A 5'UTR//intron       25412662 chr7:28379095-28379096(-) m6A 5'UTR//intron       25412662//24981863//25569111 chr7:28379128-28379129(-) m6A 5'UTR//intron       25412662//24981863//25569111//22575960 chr7:28379157-28379158(-) m6A 5'UTR//intron       25412662//24981863//25569111//22575960 chr7:28379236-28379237(-) m6A 5'UTR       25412662//24981863//25569111//22575960 chr7:28379498-28379499(-) m6A 5'UTR       25412662

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-674-3p	Exosome B6 BMDCs     22031862 Exosome Bone marrow-derived macrophages     25159140
	Zfp36	Cytoplasm Neuroblastoma cell line (N2A)     22406755

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-674-3p
Interactor2: Zfp36

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).