Basic Information:

  VIRBase ID:  

HHID00021188

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-339-5p:  MIMAT0000584          Trim25:  NM_009546     

      *It may take a few minutes to display results.

Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-339-5p	Trim25
miRBase Accession/Entrez ID	MIMAT0000584	217069
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	AA960166//AL022677//EFP//Zfp14//Zfp147

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Trim25	chr11:88999553-88999554(+) m6A CDS       25683224//25412662//25569111 chr11:88999684-88999685(+) m6A CDS       25683224//25412662//24981863//25569111 chr11:88999737-88999738(+) m6A CDS       25683224//25412662//24981863//25456834//25569111 chr11:89000037-89000038(+) m6A CDS       25569111 chr11:89004733-89004734(+) m6A CDS       25569111 chr11:89004745-89004746(+) m6A CDS       24981863//25569111 chr11:89009141-89009142(+) m6A CDS       24981863//25569111 chr11:89009150-89009151(+) m6A CDS       24981863//25569111 chr11:89009193-89009194(+) m6A CDS       25412662//24981863 chr11:89009294-89009295(+) m6A CDS       25412662//24981863 chr11:89009323-89009324(+) m6A CDS       25412662//24981863 chr11:89010836-89010837(+) m6A CDS       25412662//24981863 chr11:89010904-89010905(+) m6A CDS       25412662//24981863 chr11:89010917-89010918(+) m6A CDS       24981863 chr11:89013487-89013488(+) m6A CDS       25683224//24981863 chr11:89013492-89013493(+) m6A CDS       25683224//24981863 chr11:89013509-89013510(+) m6A CDS       25683224//24981863 chr11:89013531-89013532(+) m6A CDS       25683224//24981863 chr11:89013641-89013642(+) m6A 3'UTR//intron       24981863 chr11:89015177-89015178(+) m6A CDS//intron       24981863//25456834 chr11:89015186-89015187(+) m6A CDS//intron       24981863//25456834 chr11:89015748-89015749(+) m6A CDS       24981863 chr11:89015781-89015782(+) m6A CDS       25569111 chr11:89016251-89016252(+) m6A CDS       24981863//25569111 chr11:89016381-89016382(+) m6A CDS       25683224//25456834//24981863//25569111 chr11:89016392-89016393(+) m6A CDS       25683224//25456834//24981863//25569111 chr11:89016532-89016533(+) m6A CDS       25683224//25456834//24981863//25412662//25569111//22608085//22575960 chr11:89016647-89016648(+) m6A CDS       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:89016744-89016745(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:89016764-89016765(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:89016773-89016774(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:89016783-89016784(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:89016790-89016791(+) m6A 3'UTR       25683224//25456834//25412662//24981863//25569111//22608085//22575960 chr11:89017237-89017238(+) m6A 3'UTR       25569111 chr11:89019544-89019545(+) m6A 3'UTR       24981863 chr11:89019556-89019557(+) m6A 3'UTR       24981863 chr11:89019572-89019573(+) m6A 3'UTR       24981863 chr11:89019585-89019586(+) m6A 3'UTR       24981863 chr11:89019601-89019602(+) m6A 3'UTR       24981863 chr11:89019651-89019652(+) m6A 3'UTR       24981863//25569111 chr11:89019691-89019692(+) m6A 3'UTR       24981863//25569111 chr11:89020091-89020092(+) Y 3'UTR//exon       26075521

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-339-5p	Exosome B6 BMDCs     22031862 Exosome Mouse hypothalamic neuronal cell line (GT1-7)     22965126 Exosome Bone marrow-derived macrophages     25159140 Mitochondrion Hippocampus neuron     27396686 Postsynaptic density ForeBrain     18410515 Synaptoneurosome ForeBrain     18410515

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-339-5p
Interactor2: Trim25

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).