Basic Information:

  VIRBase ID:  

HHID00020900

  Virus:  

Japanese encephalitis virus (P3 strain)

  Host:  

Mus musculus

  Confidence Score:  

0.5711

  Interaction Type:  

Host-Host interaction

  Predicted Binding:

 

      mmu-miR-326-3p:  MIMAT0000559          Malt1:  NM_001365019     

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Interactor Information:

	Interactor1	Interactor2
Symbol	mmu-miR-326-3p	Malt1
miRBase Accession/Entrez ID	MIMAT0000559	240354
Organism	Mus musculus	Mus musculus
Category	miRNA	mRNA
Alias	-	A630046N12//D430033E09Rik//pa//Pc//Pcasp1

RNA Editing:

Resource	Symbol	Editing Position	Change	Genetic Region
RADAR	Malt1	chr18:65636814(+) A-I      3'UTR chr18:65636808(+) A-I      3'UTR chr18:65636809(+) A-I      3'UTR chr18:65636745(+) A-I      3'UTR chr18:65636731(+) A-I      3'UTR

Resource	Symbol	Editing Position	Change	SeqReg	exReg	PMID
DARNED	Malt1	chr18:65477077(+) C-I intron -    22448268 chr18:65477077(+) A-I intron -    22524474 chr18:65477091(+) A-I intron -    22524474 chr18:65477154(+) A-I intron -    22524474 chr18:65477155(+) A-I intron -    22524474 chr18:65477160(+) A-I intron -    22524474

RNA Modification:

Resource	Symbol	ModificationPosition	Type	Genomic Context	PMID
RMBase	Malt1	chr18:65430998-65430999(+) m6A 5'UTR       25412662//25569111 chr18:65431245-65431246(+) m6A CDS       25412662 chr18:65431325-65431326(+) m6A CDS       25412662 chr18:65437829-65437830(+) m6A CDS       25412662 chr18:65473108-65473109(+) m6A CDS       25569111 chr18:65475152-65475153(+) m6A CDS       24981863 chr18:65475160-65475161(+) m6A CDS       24981863 chr18:65475168-65475169(+) m6A CDS       24981863 chr18:65475180-65475181(+) m6A CDS       24981863 chr18:65475205-65475206(+) m6A CDS       24981863 chr18:65475233-65475234(+) m6A CDS       24981863 chr18:65475989-65475990(+) m6A CDS       24981863 chr18:65476031-65476032(+) m6A CDS       24981863 chr18:65476039-65476040(+) m6A CDS       24981863 chr18:65476096-65476097(+) m6A CDS       25456834//24981863 chr18:65476109-65476110(+) m6A CDS       25456834//24981863//25569111 chr18:65476122-65476123(+) m6A CDS       25456834//24981863//25569111 chr18:65476213-65476214(+) m6A CDS       25683224//24981863//25569111 chr18:65476255-65476256(+) m6A CDS       25683224//24981863//25569111 chr18:65476273-65476274(+) m6A CDS       25683224//24981863//25569111 chr18:65476293-65476294(+) m6A CDS       24981863//25569111 chr18:65476368-65476369(+) m6A CDS       24981863

RNA Localization:

Resource	Symbol	Subcellular Localization	Tissue or Cell Line	PMID
RNALocate	mmu-miR-326-3p	Exosome Mast cells     17486113 Exosome B6 BMDCs     22031862 Exosome Bone marrow-derived macrophages     25159140

Interaction Network (The top 100 interactions):

Interactor1: mmu-miR-326-3p
Interactor2: Malt1

Evidence Support:

Weak-Evidence	RNA-Seq
Prediction-Evidence	miRanda
Support Database	ViRBase

References:

PMID	32552669	Target region	None
Source	ViRBase	Interactor1 expression	Downregulation
Tissue or cell line	Mice brain tissues	Interactor2 expression	None
Description	The circRNA-miRNA-mRNA ceRNA network.In total, we detected 569 negatively regulated miRNA-circRNA pairs and 2719 negatively regulated miRNA-mRNA pairs (Additional file 6: Table S5).